BAC Information

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BAC

Clone NameMSMg01-217N15
Chromosome7 (Build37)
Map Location 120,504,580 - 120,504,891
singlet/doubletsinglet
Overlap geneBtbd10
Upstream geneMicalcl, Parva, LOC627808, Tead1, 4632411J06Rik, LOC434227, Arntl, A630005I04Rik
Downstream genePth, LOC100042736, Mlstd2, EG434228, Spon1, Rras2, LOC668451, Copb1, Psma1, 4933406I18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-217N15.T7 (MSMg01no217_n15.b1)MSMg01-217N15.TJ (MSMg01no217_n15.g1)
ACCAG397234AG397235
length729759
length of high quality
(start - end)
318 (42 - 359)129 (118 - 246)
definitionCHROMAT_FILE: MSMg01no217_n15.b1 PHD_FILE: MSMg01no217_n15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:39 2005CHROMAT_FILE: MSMg01no217_n15.g1 PHD_FILE: MSMg01no217_n15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTGTATAAGAAACAAGAATGTACAATCAGTACCCATATATTCAAGTTTT
TAGCAAAGACCCACCAAAGAAATCAAAAACTGGAACTGAGAATACAGACT
TCCAAGAATCATCTGATTAGATGTCATAAAAAGATAGGTAGTAAACTATA
AATTTTATAACACAAAATAAAGGGTTTATTTTAAACATACAATTTACAAC
CACACACCCCCCACACACCCAAAATGGCCAAAAGTGGGAAGAGAAGAAAT
TTTAAATTAGCTGTTTAACTTATCAATGTTTCTGTTTAACGATAACCAAA
GTGTTTGTTTTTTTACCAATGCCCCACCCCCCCATTAGAAAAATGAATAC
TTGAGTTTATGAGATAACCCCCTAAAGTAGATATCATATACTTTAACACA
ATTATTCAAGCAAAGTTTGTAGAATAAATTTTTCATCAAAGCATTTCATA
AGTTCTCATAAAACAATTTCAAAAGTAACAGCGATTTAAGGCTGTTAAAT
AGTATCATTCACTAGGGATGCATAGATATCTAAAATATAGCAGCTTTTAC
CTTTTAATGCGTTCTAGCTCAACTAACACAAAGCGTATGTATAACTCATA
CATCCTATCATAGCAATAATAAATATATAGCACGAATTTTCTTTAAAAGG
AACATGAACATATCATGCCCTAACAGTCC
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTCAGAAATCCCTGAGGTAGAACAGTCCAGGTAAGTTGGGTAGAA
AAGTGGGTATAGGGACCTGTCCAAGTAAAGGCAAATATATTTTGTGACTG
GGCATCTAGAGGGCTAGAGAAGAATGCATCCTTGAGATCTAGGACTTAGA
AATGGGAAGTTCCTGAGGGGATAGTGGAAAGAAGTGTGTAGGGGTTATCC
ACAACTGGATGGAGAGGCACCACTGCGAAATTAATACCTCTGAGGTCTCG
ACCCGATATTTTTTTTTTATGACTCATGCCTGCTACCCTACGGCTTTTAC
TTTTTTTTTCTTGCCCCCCCCCCCCCCTCCCTTTCCCTCGCTTATTGACT
AGGTGTTGACCCCCCCCCCTACCAAAAATAAACCCTATTTTTTGTCGTGT
CCCCTTCCACCCCTTCCTCCACCATCCTTTCTTCTCTCCCCCCCTCTATT
TTTATATTTTTACCTTCTCGCTCCTAACTTCCTTTCTTACTACCCCTTCT
TCTCTTCTCTTCCCCTCTCTCTTTTTCTTTTCATCTTCCTTTTCGCCTAT
TTCGTCCCACTTTCTTTCTTTATTCCTTTCCCGCCCCTCGTTATCTTTTC
TTTTAACCTCTTCCTCCCTTCTTTTCGGTGGACCCCTTGTGTCATTTTCT
TTTTTTCACTTCCCCGTTAGCCTTAATTTTCTCCCTCTTTTTTCCCGCCC
TTTATTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no217_n15.b1 MSMg01no217_n15.b1 CHROMAT_FILE:
MSMg01no217_n15.b1 PHD_FILE: MSMg01no217_n15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:45:39 2005
         (318 letters)



>mm_chr7_120504376_120505093
          Length = 718

 Score =  588 bits (304), Expect = e-172
 Identities = 310/312 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttgtataagaaacaagaatgtacaatcagtacccatatattcaagtttttagca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgtataagaaacaagaatgtacaatcagtacccatatattcaagtttttagca 264

                                                                       
Query: 65  aagacccaccaaagaaatcaaaaactggaactgagaatacagacttccaagaatcatctg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagacccaccaaagaaatcaaaaactggaactgagaatacagacttccaagaatcatctg 324

                                                                       
Query: 125 attagatgtcataaaaagataggtagtaaactataaattttataacacaaaataaagggt 184
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 attagatatcataaaaagataggtagtaaactataaattttataacacaaaataaagggt 384

                                                                       
Query: 185 ttattttaaacatacaatttacaaccacacaccccccacacacccaaaatggccaaaagt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttattttaaacatacaatttacaaccacacaccccccacacacccaaaatggccaaaagt 444

                                                                       
Query: 245 gggaagagaagaaattttaaattagctgtttaacttatcaatgtttctgtttaacgataa 304
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 445 gggaagagaagaaattttaaatcagctgtttaacttatcaatgtttctgtttaacgataa 504

                       
Query: 305 ccaaagtgtttg 316
           ||||||||||||
Sbjct: 505 ccaaagtgtttg 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)