BAC Information

Click to search

BAC

Clone NameMSMg01-218H11
Chromosome7 (Build37)
Map Location 93,870,431 - 93,870,675
singlet/doubletsinglet
Overlap geneFolh1
Upstream geneEG244114, EG620928, EG546980, LOC666382, LOC637652, LOC637667, EG666418, LOC100039471, EG546981, Vmn2r-ps86, Vmn2r76, Olfr310, Olfr309, Olfr308, Olfr307, Olfr306-ps1, Olfr305, Olfr304, Olfr303, Olfr301, Olfr1531-ps1, Olfr300-ps1, Olfr299, Olfr298, Olfr297, Olfr296-ps1, Olfr295, Olfr294, Olfr293, Olfr292
Downstream geneEG546983, Vmn2r-ps87, LOC637896, EG621430, LOC621477, Nox4, Tyr, Grm5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-218H11.T7 (MSMg01no218_h11.b1)MSMg01-218H11.TJ (MSMg01no218_h11.g1)
ACCAG397627AG397628
length742720
length of high quality
(start - end)
272 (44 - 315)235 (126 - 360)
definitionCHROMAT_FILE: MSMg01no218_h11.b1 PHD_FILE: MSMg01no218_h11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:29 2005CHROMAT_FILE: MSMg01no218_h11.g1 PHD_FILE: MSMg01no218_h11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAAATAAAGCAGCTCCACTAAAATTAGTGATGAGACAAGGGTTCTGAG
TCTTTTGATATCTCTTCAACTTAGTACTTGTATATCTAGCAGAGCAGTAT
GATAAAAGAAGATGAGGATGATACAAATTAGAATGGAATAAGTCAAAGTA
TAGCTATTCACAAATGATATCATAGTATACATAAAGGACTCCACAAATTC
GACCAGAGAAGTAACACAGCAGAAAAACATATTCAGCAAAGAAGATGGAT
AGAAAATTACCTCAAAAAGTAGTTTCATCTTCAATAAACCATTTGGGCAG
AGAAGAAATTATTTTTTTCCCCANACCTTATCCCCCATATATACACTATA
TAAAATAAAGCACTAACCCCCCCAAATAAAAGAAAATATAACGGGAGGTG
GGAGTCTCTGAATAAAGAAAGTGACCCATTTATCAGAAGATGGGAACATC
CCCCATGCTCATCTTTTCCTATCCCCAAAGGACTTTTGGAAAGGATGTCC
ATATGGGAGATATCAGCTATTTTCTTCATTTTGAGATAACATAACCTCCC
TCTGTCATGGTGGTAAATTTCCTTCTTCTGGGTCTTGGCTAACCACTCAT
ACCCGGCCTACCTCATGTTCTTCTTCCCTGAAAAGTATTCTTCTGAAGCC
CTTGCCTTTTCCTTGGCTATTCCCTCCATCTTGGCGCGTCTA
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTAAGGGTACAGACAACTATGGTGGAAG
AGACATGGTAATAGAATTTTGCCTCCATAGTCAGACAGCAGAGAGATGAA
GGCTGGGGGTCATTTCATAATACTGCCTACACTAAGTGTGTGAGACCCTA
ATTTTGTTAAAAATGTTAGTTAAAAATAAATGACCTCACACTTAGAAGTT
TGTTCTAAATGTCATCAGGTTGACTATAAATAAAATTAACCATCATAGTC
CCCAACAATTCAAATGATTTGTAGAAAAAGGAATAAGGCTGCAGGTATCA
CAAAACTTGTTTTTAGTCTCCCCACCCCCACCCTTGGAAAAGAACTCCAA
TTGCTAAAAATTGTGCCCCCCATTAAAAAAAGAGATTTCCTGAAATTTTA
ACAGTTCTGGCAATCAAAGAGAACGATCAAATGAGGGGAATGCCAATGAA
ATTTGAGAAAAATCTTTACTAAATAAACATCTATCAGATCATTGAAATCT
AGAATATACTAATAAAACATTTATTACCTGTCTAAACCCTGGCAAATGAA
ATAGAAAATGTTCTCCCAAGATGAACAACAAATATCCCATAACGCAAGAC
AGTGTTCAGCATATTAATAATCAGAGAAATTTGAACCATAACCAGCTTGG
GGATTCTTTCTCTCTCCAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no218_h11.g1 MSMg01no218_h11.g1 CHROMAT_FILE:
MSMg01no218_h11.g1 PHD_FILE: MSMg01no218_h11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:29 2005
         (235 letters)



>mm_chr7_93870242_93870876
          Length = 635

 Score =  397 bits (205), Expect = e-115
 Identities = 230/245 (93%), Gaps = 11/245 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   catagtcagacagcagagagatgaaggctgggggtcatttcataatactgcctacactaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 catagtcagacagcagagagatgaaggctgggggtcatttcataatactgcctacactaa 249

                                                                       
Query: 61  gtgtgtgagaccctaattttgttaaaaatgttagttaaaaataaatgacctcacacttag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 250 gtgtgtgagaccctaattttgttaaaaatgttagttaaaaataaatgacctcacactcag 309

                                                                       
Query: 121 aagtttgtt-----------ctaaatgtcatcaggttgactataaataaaattaaccatc 169
           |||||||||           ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 310 aagtttgtttcttgttgattctaaaagtcatcaggttgactataaataaaattaaccatc 369

                                                                       
Query: 170 atagtccccaacaattcaaatgatttgtagaaaaaggaataaggctgcaggtatcacaaa 229
           |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 370 atagtctccaacaattcaaatgatttggagaaaaaggaataaggctgcaggtatcacaaa 429

                
Query: 230 acttg 234
           |||||
Sbjct: 430 acttg 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)