BAC Information

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BAC

Clone NameMSMg01-218P12
Chromosome7 (Build37)
Map Location 144,523,201 - 144,523,477
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546009, EG621677, EG668771, Mgmt, EG621804, Ebf3
Downstream gene9430038I01Rik, Txnl2, LOC435235, Tcerg1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-218P12.T7 (MSMg01no218_p12.b1)MSMg01-218P12.TJ (MSMg01no218_p12.g1)
ACCAG397938AG397939
length755786
length of high quality
(start - end)
313 (44 - 356)281 (75 - 355)
definitionCHROMAT_FILE: MSMg01no218_p12.b1 PHD_FILE: MSMg01no218_p12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:08 2005CHROMAT_FILE: MSMg01no218_p12.g1 PHD_FILE: MSMg01no218_p12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTATGTTTAACTCTGTGCCCTATTTTTTAATAGAGTTATTTGGTTCTC
TGGAGTCTACCTTCTTGAGTTCTTTGTATAGATTGAATATTAGCCCTCTA
TCAGACATAGGGTTGGTAAAGATCATTTTCCCAATCCTTAGATTGCCATT
TTGTCCTATTGACAGTGTCCTTTGCCTTACAGAAGCTTTTCAAGTTTATG
AGGTCCCATTTGTCAATTGTTGATCTTAGAGCCTGAGACATTGGTGTTCT
GTTCAGGAAAATTTCCCCTGATTCGATGTGTTCAAGGCTCTTTCCCACTT
TCTCTTCNATTGANTCCGAGNACANGNTCGCGCNTTAGTGGTGAGGTGGG
AGTGGGTAAGTGCCCCCCAAATATATTAAAAAAGCGGGTGGGGGGGGGGG
ATTATCTTCGTTTTTGTTCTCCTTCCTAGTTTCTTATTAATTTTCTTCTC
ATGATCCTGGCTTCGCGCTTATGTATCTTATCTTTTCTTTTTCGTTTCTT
TTGACCTTTATCCTCTTACTTATTTTGTTTCCTTTTGGTCTCTTTTCCTT
GTCGTCTCTACTTATACTCTTTTCTGGTCTTTTGTCTTGTTGTATATTGG
ACCTCCATTGTTCTTCTTCTTTTTTCCATTTCACCTATTTCTGAATTTCT
TTTGAACTGTTCCTGCGATGTGTCTCTCATCTTTACCTCTTGCTTCCTGT
CTCTN
TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGACAGTGTGCCTATATAGGGGAGT
TGACAACCTTGGTGGCAGACTTTATTGGGGCTTTCTCATGTAGGCATGAC
TGGTAAAGAGAATCACTCACATGGCTATGTTCAAGATCCAGACCCACCCT
TTTCCTCTAGGAGCAGGACTGACTGCATTTCTAACTACATGTTCAGTCTT
TCTCATCGTTGTGGATAGCAAGTCCATCTTGGAAAGTTTCTAGGACTAAT
GATAACTTTCCAGGATTTGTGACAGAAGGCTAGACATCCATTGGGAAGCC
TTTGATTTTTCTTTCTCCANATCTAACTCTCCCTCTCCCTCTCCCTCTCC
CTCTCCCTCTCCCCCCCCAAAAAAAAAAAAATACCCGGGGGGGGGGGGTG
GCCTTTTTTTTTCCCCTTCCTTTACCCCCTACCGCCATTTTTTACCTTTT
TCCCCATCTTTCTTCCCTCCCTTATTTACCTTTCCCCCAACCCCCCTTTT
TCCTTTTCTTTTTTTTCCCATTCTAATGTTTTATTCCATCGCCCACTCGC
AATTTCGTTTTCTCCATCCTCTACTTTTATCCTTCCTCCCTTCATTTTTC
CTCCTTCTTCCCGCCTCCTTTCTATTTTCTTCCCCCTATACTTTCTCCCC
ATCCCTCATTGTTTCCCTCTCTCCTCCTTACCATTCGCGCTTTTCACCCT
TACCCACCCGTTTGACCTTTCACTCTGTTCCCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no218_p12.g1 MSMg01no218_p12.g1 CHROMAT_FILE:
MSMg01no218_p12.g1 PHD_FILE: MSMg01no218_p12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:08 2005
         (281 letters)



>mm_chr7_144523001_144523681
          Length = 681

 Score =  474 bits (245), Expect = e-138
 Identities = 269/277 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagacagtgtgcctatataggggagttgacaaccttggtggcagactttattggggcttt 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 477 cagacagtgtgcctatataggggagttggcaaccttggtggcagactttattggggcttt 418

                                                                       
Query: 61  ctcatgtaggcatgactggtaaagagaatcactcacatggctatgttcaagatccagacc 120
           |||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 417 ctcatgtaagcatgactggtaaagagaatcactcacatggctacattcaagatccagacc 358

                                                                       
Query: 121 cacccttttcctctaggagcaggactgactgcatttctaactacatgttcagtctttctc 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 357 cacccttttcctctaggagcaggactgactgcatttctaaccacatgttcagtctttctc 298

                                                                       
Query: 181 atcgttgtggatagcaagtccatcttggaaagtttctaggactaatgataactttccagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 297 atcgttgtggatagcaagtccatcttggaaagtttctaggactaatggtaactttccagg 238

                                                
Query: 241 atttgtgacagaaggctagacatccattgggaagcct 277
           | ||| |||||||||||||||||||||||||||||||
Sbjct: 237 agttgggacagaaggctagacatccattgggaagcct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)