BAC Information

Click to search

BAC

Clone NameMSMg01-231F21
Chromosome7 (Build37)
Map Location 147,807,524 - 147,957,445
singlet/doubletdoublet
Overlap geneOlfr61, Olfr53, Olfr539, GA_x5J8B7W3EKE-4574231-4574913, Olfr45, Olfr541, GA_x5J8B7W3EKE-4522784-4521912, Cyp2e1
Upstream geneE030019B06Rik, 9330101J02Rik, LOC100043472, EG434253, EG664869, Gpr123, LOC244229, Kndc1, Utf1, LOC100039095, 6430531B16Rik, Adam8, Tubgcp2, Zfp511, Msx3, Drd1ip, Prap1, 1810014F10Rik, Echs1, Paox, Mtg1, Sprn, Olfr522, Olfr523, Olfr524, E430002D04Rik, 5830411N06Rik, EG622335, Olfr525, Olfr527, GA_x5J8B7W72BC-152913-152037, Olfr60, GA_x5J8B7W72BC-125691-125311, Olfr530, LOC622973, Olfr531, Olfr532, Olfr533, Olfr534-ps1, Olfr535, Olfr536, Olfr537-ps1, Olfr1523-ps1, Olfr538, Olfr1553-ps1, Olfr46
Downstream geneSyce1, LOC100043529, BC066028, 1190003J15Rik, Scgb1c1, Odf3, Bet1l, Ric8, Sirt3, Psmd13, LOC100043546, Cox8b, Nlrp6, Athl1, Ifitm5, Ifitm2, Ifitm1, LOC665143, Ifitm3, Ifitm6, B4galnt4, Pkp3, Sigirr, Trp53i5, Ptdss2, Rnh1, LOC546015, Hras1, Lrrc56, 1600016N20Rik, Rassf7, AA673488, Irf7, Mucdhl, Sct, Drd4, Deaf1, Tmem80, Eps8l2, B230206H07Rik, Taldo1, LOC100043585, Pddc1, Cend1, Slc25a22, Lrdd, Rplp2, Pnpla2, Efcab4a, Cd151, Polr2l, Tspan4, Chid1, Ap2a2, Muc6, LOC100039649, Muc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231F21.T7 (MSMg01no231_f21.b1)MSMg01-231F21.TJ (MSMg01no231_f21.g1)
ACCAG398203AG398204
length730730
length of high quality
(start - end)		634 (45 - 678)281 (77 - 357)
definitionCHROMAT_FILE: MSMg01no231_f21.b1 PHD_FILE: MSMg01no231_f21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:38 2005CHROMAT_FILE: MSMg01no231_f21.g1 PHD_FILE: MSMg01no231_f21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,807,524 - 147,808,154)(147,957,165 - 147,957,445)
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTATCATAGTGATGTAATGGCTAAAGAAACTCTTATTTTTGCTAGG
CATCCATCTTGGTACCTAATAGCTATTTGTCTCTGACTCACTTCCTGGAA
GACAAGTTCCCAGTAACTCTAATTCCCTTTGTCCAACTCAGAAATGTACA
GCTTCTCCAACTGTACCCTGGCCAGAAGCCATCAATTGAGAAAAGCTACC
CTTCAGCATCTGTATTACAATTTTTAAGAGTTCTCATTAATGCCTTCCTT
TTTAGGCTTTTCCTTTTGGGAGGGTGTCTGTGGTAGGGTAGGTGTTGTCA
TGTAAGCCTTCCTTGTCCCTCTTTCTCAATTGTGCATCTTCAGTCATCAA
TATCGCTGCCAAAGTACCTTCCATGTTCTTTATACTTATCTGGAGCTTGG
GTCATGAGTGTCTGTTGTAGGAGGCCAGCCCGCGGCCTACATGAATTGGG
TATTCCTGGAAGGCAGGCTGGGGCTGAAAAAGGAACTAGATGGCAAGAAA
AGAATGATGAGGCCAAGACAAATTTTCTCTGATCAAGGCCTACGAGTTTA
CTAAGAGACTGTGCTTATAAGGGGGAAGGCCCATTACCCCCAACCCACCC
CCACCCCTGCCAGTCCATCATTGGTGCTTTGTCACCATGCCGCCTTGCTG
TCAGCACTTGGTTGCCAGGATGCTGCTTAT

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTGCCCAGAATTTGCTTCCTA
AGCCGTGAAGAGGAAGTGAAATGGATTTAGGATAGCCTGAATTGCTTTTC
TTTCAGCGGCCACTTCAGAGCTTCCTGGGGTAAGATGCTCTGGGATCACT
CCAACCTGACTGGTATCCCTGTCTCAGCCTATAAATCCAGGAAATGCTTC
TCAGGGGAAATTGGAACATTGTTTTCTTCATCAGAAATTATTTACAGAGC
AGATCACAGACTCATTCCCCTTTCAATTTCAGCACTGGGCCATAAACATC
CCAGTGGAGTGTTTATTTTGACCCCCCACCCCTCAGGATACTAGGTCCTG
GCACATACAAGGTCATGCGCTTTTAAAGAAGTTCATTTAGTGACTGGGCC
ACAGAATGACAACTGAGGCCTGAATTGCACAGGGCGACCCTGACAGGTCT
CAGATATGATGTATGGGAGTTTGGCTTCTCATTCATGTACCTTCAATTTC
TGGGTATTTCATGAGAATCAGTAGCCCATATCTCAGAGTTGTGCTGGTGG
TCTCTGTTCCTGCAAAGAACAGGTCGGCCAAAGTCACAGAAATATTTTCC
ATTGTGTACATGGGTTCTTGGCTGTGTTTTTCCTGTTGAAGTGGAGACAG
ATAGGGATCTGGCAAGAAGGTGATGTCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_f21.b1 MSMg01no231_f21.b1 CHROMAT_FILE:
MSMg01no231_f21.b1 PHD_FILE: MSMg01no231_f21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:38 2005
         (634 letters)



>mm_chr7_147807321_147808354
          Length = 1034

 Score = 1135 bits (587), Expect = 0.0
 Identities = 620/631 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctatcatagtgatgtaatggctaaagaaactcttatttttgctaggcatccat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctatcatagtgatgtaatggctaaagaaactcttatttttgctaggcatccat 263

                                                                       
Query: 64  cttggtacctaatagctatttgtctctgactcacttcctggaagacaagttcccagtaac 123
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cttggtacctaatagttatttgtctctgactcacttcctggaagacaagttcccagtaac 323

                                                                       
Query: 124 tctaattccctttgtccaactcagaaatgtacagcttctccaactgtaccctggccagaa 183
           ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 324 tctaactccctttgtccaactcagaaatgcacagcttctccaactgtaccctggccagaa 383

                                                                       
Query: 184 gccatcaattgagaaaagctacccttcagcatctgtattacaatttttaagagttctcat 243
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 384 gccatcaattgagaaaagctacacttcagcatctgtattacaatttttaagagttctcat 443

                                                                       
Query: 244 taatgccttcctttttaggcttttccttttgggagggtgtctgtggtagggtaggtgttg 303
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 444 taatgccttcctttttaggctcttccttttgggagggtgtctgtggtagggtaggtgttg 503

                                                                       
Query: 304 tcatgtaagccttccttgtccctctttctcaattgtgcatcttcagtcatcaatatcgct 363
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tcatgtaagccttccatgtccctctttctcaattgtgcatcttcagtcatcaatatcgct 563

                                                                       
Query: 364 gccaaagtaccttccatgttctttatacttatctggagcttgggtcatgagtgtctgttg 423
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gccaaagtagcttccatgttctttatacttatctggagcttgggtcatgagtgtctgttg 623

                                                                       
Query: 424 taggaggccagcccgcggcctacatgaattgggtattcctggaaggcaggctggggctga 483
           ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 624 taggaggccagcctgcggcctacatgaactgggtattcctggaaggcaggctggggctga 683

                                                                       
Query: 484 aaaaggaactagatggcaagaaaagaatgatgaggccaagacaaattttctctgatcaag 543
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 684 aaaaggaactagatggcaagaaaagaatgatgaggccaagacaatttttctctgatcaag 743

                                                                       
Query: 544 gcctacgagtttactaagagactgtgcttataagggggaaggcccattacccccaaccca 603
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gcctatgagtttactaagagactgtgcttataagggggaaggcccattacccccaaccca 803

                                          
Query: 604 cccccacccctgccagtccatcattggtgct 634
           |||||||||||||||||||||||||||||||
Sbjct: 804 cccccacccctgccagtccatcattggtgct 834


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space:   638976
Effective search space used:   638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no231_f21.g1 MSMg01no231_f21.g1 CHROMAT_FILE:
MSMg01no231_f21.g1 PHD_FILE: MSMg01no231_f21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:38 2005
         (281 letters)



>mm_chr7_147956965_147957645
          Length = 681

 Score =  505 bits (261), Expect = e-147
 Identities = 276/281 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttctgcccagaatttgcttcctaagccgtgaagaggaagtgaaatggatttaggatagc 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 481 tttctgcccagattttgcttcctaagccgtgaagaggaagtgaaatggatttaagacagc 422

                                                                       
Query: 61  ctgaattgcttttctttcagcggccacttcagagcttcctggggtaagatgctctgggat 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 421 ctgaattgcttttctttcagcgtccacttcagagcttcctggggtaagatgctctgggat 362

                                                                       
Query: 121 cactccaacctgactggtatccctgtctcagcctataaatccaggaaatgcttctcaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cactccaacctgactggtatccctgtctcagcctataaatccaggaaatgcttctcaggg 302

                                                                       
Query: 181 gaaattggaacattgttttcttcatcagaaattatttacagagcagatcacagactcatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gaaattggaacattgttttcttcatcagaaattatttacagagcagatcacagactcatt 242

                                                    
Query: 241 cccctttcaatttcagcactgggccataaacatcccagtgg 281
           |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 241 cccctttccatttcagcactgggccataaacatcccagtgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |