BAC Information

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BAC

Clone NameMSMg01-233F05
Chromosome7 (Build37)
Map Location 148,237,957 - 148,238,242
singlet/doubletsinglet
Overlap genenone
Upstream geneDrd1ip, Prap1, 1810014F10Rik, Echs1, Paox, Mtg1, Sprn, Olfr522, Olfr523, Olfr524, E430002D04Rik, 5830411N06Rik, EG622335, Olfr525, Olfr527, GA_x5J8B7W72BC-152913-152037, Olfr60, GA_x5J8B7W72BC-125691-125311, Olfr530, LOC622973, Olfr531, Olfr532, Olfr533, Olfr534-ps1, Olfr535, Olfr536, Olfr537-ps1, Olfr1523-ps1, Olfr538, Olfr1553-ps1, Olfr46, Olfr61, Olfr53, Olfr539, GA_x5J8B7W3EKE-4574231-4574913, Olfr45, Olfr541, GA_x5J8B7W3EKE-4522784-4521912, Cyp2e1, Syce1, LOC100043529, BC066028, 1190003J15Rik, Scgb1c1, Odf3, Bet1l, Ric8, Sirt3, Psmd13, LOC100043546, Cox8b, Nlrp6, Athl1, Ifitm5, Ifitm2, Ifitm1, LOC665143, Ifitm3, Ifitm6
Downstream geneB4galnt4, Pkp3, Sigirr, Trp53i5, Ptdss2, Rnh1, LOC546015, Hras1, Lrrc56, 1600016N20Rik, Rassf7, AA673488, Irf7, Mucdhl, Sct, Drd4, Deaf1, Tmem80, Eps8l2, B230206H07Rik, Taldo1, LOC100043585, Pddc1, Cend1, Slc25a22, Lrdd, Rplp2, Pnpla2, Efcab4a, Cd151, Polr2l, Tspan4, Chid1, Ap2a2, Muc6, LOC100039649, Muc2, Muc5ac, Muc5b, Tollip, EG623757, Brsk2, 2700078K21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-233F05.T7 (MSMg01no233_f05.b1)MSMg01-233F05.TJ (MSMg01no233_f05.g1)
ACCAG399568AG399569
length744736
length of high quality
(start - end)		319 (46 - 364)289 (74 - 362)
definitionCHROMAT_FILE: MSMg01no233_f05.b1 PHD_FILE: MSMg01no233_f05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:01 2005CHROMAT_FILE: MSMg01no233_f05.g1 PHD_FILE: MSMg01no233_f05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGGACAGCCAGGTCTACATAAAACAGGGGTTCTCAAATGCTACA
ACTCTTTATACAGTTTCTCATGTTGTGGTAATACCCAACCATAAAATTAT
TTTTATTGCTATTTCATAACAATAATTTTCCTACTTATGTAATATAAATA
TCTGATGTGCAGATGGCCTTAGGAGACCCTTTGTGAAAGGTTCATTTGTC
TCCCCAAGGGGTCACAACCCACAGGTTGAGAACCACTGACATAAAGAGAC
CCTGTCTCAAAAAAAAATCTAAATAAATAAATAAAGTCCAAATGGGGGAA
GAGGGTCAAAAATTATATCTTGTACCGCCCCCCCCCCAGAATCTGTGGAT
AGGGACCTAAGAAGATGCCCCCCCCACCTTCAATTGCCCGTGTGCCATCT
GTGGTCATGGGTCAAGGGCTTGCTGACTGTGTGAATTTCCTCCCATACAA
AGAAGAACCTTCCCCCTCCAATGACTTCACAGCAGGTATATGAGCTACAG
TGTGACCCCTGGGGCTCCTATGGCCTTCCTGAATGAGACCATAAGTGGCT
TACCAGAACTGCAGGGCCCCTTCACAGGGGTCCCATTGGCCCCTTGGCCC
TGGTTGAACTTTATTGGTCCATTTTTGGTCCCCTATCCTAATTTGCCTTG
GCCCATATGTTTTCTTGGCTGAACCCCCTTAATGATGCTTTTCG

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACCTGGAAGGCTAGAGTGGCTGACCAT
TGATCCCCAGGATCTGCCTGCTACGATTGTAAGTGTGGCATGCCCAGCTT
ATTTATTTATTTATTTACTTACTTATTTATAACCAGATTGTCTTTCGTTG
AAATATTTTCTCTAGTTGCTTGTTAGCTAGCTGGGCATCCATCCCAGAAG
GCTACTATTGATGTCACAGGGTGCCCATCCACATGGTAGCCTACAGACCG
CAGTACTCAGGATCTCCTTAATACTTTCAGAAAGTTCTCTAAGGACCAGT
GTTGCATGTGTTTTTTACTCCCCCCCACCTTTCCACTGTGTGTAATGTTC
TTCTGCTTCTTTCCCCCTCTTGGAGGCTCCTTGAAGACTCTGATGCTCAG
GCCAAGACAGAGGCATAGGGCACCACCTCCATGCTGGCCTGTCCGTCTGG
ATGGTCAGTTTCACTGTCATTTTCAGACTGTTCCAGTCACTGGTTACCTT
GGCAGCGTCATTACCAATTGTTTTTGGAGACAGACCCAAGGGACTGATCT
TCGGGACCAGGCATATGTGTTGCCAACCTCACCTCAAGTACACAACTTTG
ATCCCCTTGTGCCCGATGGACGCGGCTGGTGTCGCATGATCCCGGATTCA
GAAAGTTGTACTGCAGCCTCCTCTTGATTGTACACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no233_f05.g1 MSMg01no233_f05.g1 CHROMAT_FILE:
MSMg01no233_f05.g1 PHD_FILE: MSMg01no233_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:01 2005
         (289 letters)



>mm_chr7_148237650_148238337
          Length = 688

 Score =  516 bits (267), Expect = e-151
 Identities = 282/287 (98%), Gaps = 1/287 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acctggaaggctagagtggctgaccattgatccccaggatctgcctgctacgattgtaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 acctggaaggctagagtggctgaccattgatccccaggatctgcctgctacgattgtaag 534

                                                                       
Query: 61  tgtggcatgcccagcttatttatttatttatttacttacttatttataaccagattgtct 120
            |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 533 cgtggcacgcccagcttatttatttatttacttacttacttatttataaccagattgtct 474

                                                                       
Query: 121 ttcgttgaaatattttctctagttgcttgttagctagctgggcatccatcccagaaggct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 ttcgttgaaatattttctctagttgcttgttagctagctgggcatccatcccagaaggct 414

                                                                       
Query: 181 actattgatgtcacagggtgcccatccacatggtagcctacagaccgcagtactcaggat 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 413 actattgatgtcacagggtgcccatccacatggtagcctacagactgcagtactcaggat 354

                                                          
Query: 241 ctccttaatactttcagaaagttctctaaggaccagtgttgcatgtg 287
           ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 353 ctccttaatactttcagaaagttctctaa-gaccagtgttgcatgtg 308


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 688
Length adjustment: 9
Effective length of query: 280
Effective length of database: 679
Effective search space:   190120
Effective search space used:   190120
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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