BAC Information

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BAC

Clone NameMSMg01-233J09
Chromosome7 (Build37)
Map Location 13,346,384 - 13,346,663
singlet/doubletsinglet
Overlap genenone
Upstream geneEG628898, V1rg5, V1rg6, LOC665999, V1rg4, LOC100042423, LOC628946, LOC100043075, LOC100042433, V1rg7, LOC100042437, V1rg3, LOC100042446, LOC100043092, V1rg9, V1rg12, V1rg8, V1rg11, Zfp551, EG666065, Zfp606, 2900092C05Rik, EG637908, EG666085, Vmn2r55, LOC629079, LOC629081
Downstream geneEG232875, LOC100043128, LOC100042515, Zfp329, Zfp110, Zfp128, Zscan22, Rps5, 2310014L17Rik, 1810019N24Rik, Zfp324, Zfp446, Slc27a5, ZBTB45, LOC100042553, Trim28, Chmp2a, Ube2m, Mzf1, V1rj3, LOC100043156, V1rk1, LOC666177, EG232887, V1rj2, 6330408A02Rik, Lig1, Pla2g4c, LOC666225, Cabp5, LOC666232, Gm767, LOC666243, 9230107M04Rik, EG666256, LOC666267, LOC100042624, LOC100043194
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-233J09.T7 (MSMg01no233_j09.b1)MSMg01-233J09.TJ (MSMg01no233_j09.g1)
ACCAG399742AG399743
length670739
length of high quality
(start - end)
39 (49 - 87)285 (77 - 361)
definitionCHROMAT_FILE: MSMg01no233_j09.b1 PHD_FILE: MSMg01no233_j09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:19 2005CHROMAT_FILE: MSMg01no233_j09.g1 PHD_FILE: MSMg01no233_j09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCCATTTTCCCGACTGCNCGGAATCATAAAATTACGGCAGGATACCCAA
TTTATGGGACACAATGAAAACAGTGCTAAGAAGTTTGCAGCANCTGACTC
CATAAAGAAATTAAGAAAGTTCCTCATAACCAGAATAAAACCAAAAGTAA
TAACCCGGGGAAAACCCCCAAGGGGGAAAAAAAAAAAACACAGGGCCCTC
ACCCCAAAAAAGGGGGGGTGACAAGAGGGGGGCGGGGAAAAAAAAAACAT
AAACTATTCAACAACCGCAGGGAGGGGGGCGCTCGTTGTTCTGTACCCGC
CCCCACATGCGCCACCCCCCACCTTTCATTCTCCCCCCCCTACGCTTTCT
CTTCCTTTTTCGTGTGGTGGCACCAATACCATCACCACTTCTACAAATCT
ACCTCCACTTCATCACAAAAACAACACACAGCGCCCCGCCACCCTTTTTT
CGTACATTTTTCCAAACAAGCGGGGAGCGCCCGCACAACCCCACCCCCCC
ACCACCCCACCTTTTTTTTTTTTCTCCCCCCCCCCCCCCCCCCCCCTTCT
ATTTATATCATTAATTTTCTCTTAAGGGGTTGGATTGACCTCCCCCCCCC
CCCACAAAAAAAAAAAAAAAAAAAAACTACTCTCTTTTTGGGTGGCGCGC
TCTTTATTTTCCACAACCAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTGGTGTTCTATGAGAAGGAAGC
TCTGGCTAAAGGTTTTAGCTCGCTCACTATTTTCATCAGGCTTTTCTCCT
GTGTGAATCCTCTGATGCTGAATGAGGGGAGCAAACTGGCTGAAAGATCT
GCCACATTCATTGTATTCATAGAACTTTTTCTCAGTGTGAATGTGCTGAT
GTTCTGTTAAGAGACAAGCTGTGGCTGAAGGCCTTGCGACAGACCAGTGT
GGATTCATAGGTTCTGAGTGAGGTGGATAGCTTGCAGAAAGGCCCTCCCA
CATTCATTACTTTCTTTAGGCTTTGCACCCGCGTGGGCCCACTCATGGTG
GTTGAAGGAGGATCTGAACCATTTCCCACATTTGTTACACTCATATGGCT
TCTTACCTGTGTGAGGTCTCTGGCATTGGATCAATGGGGGCAATCTGGTT
GAAGGTCTTTCCACATTAAGAACATTTATAAGGTTTCTCACCGGCGTGGA
TTTTCTGGCATTTGGTTAGTACTGAACTGTTTGGGAAACATCTTCCACAT
TCTCGACATCTCTAATTCCTTTCTCCTGTGTGAATTTGGTGATGTTCAAT
GAGTGCTGAACTGCCACTAAAACCTTCTCCACCTTCCTGTAATGTTCAAA
GTTTCTTTTTTTATTACTTTTTTATTTATCCTTTGTCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no233_j09.g1 MSMg01no233_j09.g1 CHROMAT_FILE:
MSMg01no233_j09.g1 PHD_FILE: MSMg01no233_j09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:19 2005
         (285 letters)



>mm_chr7_13346005_13346689
          Length = 685

 Score =  514 bits (266), Expect = e-150
 Identities = 278/284 (97%), Gaps = 4/284 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctggtgttctatgagaaggaagctctggctaaaggttttagctcgctcactattttcat 60
           |||||||||||||||||||||||||||||||||||||||||    |||||||||||||||
Sbjct: 659 tctggtgttctatgagaaggaagctctggctaaaggtttta----gctcactattttcat 604

                                                                       
Query: 61  caggcttttctcctgtgtgaatcctctgatgctgaatgaggggagcaaactggctgaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 caggcttttctcctgtgtgaatcctctgatgctgaatgaggggagcaaactggctgaaag 544

                                                                       
Query: 121 atctgccacattcattgtattcatagaactttttctcagtgtgaatgtgctgatgttctg 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 ctctgccacattcattgtattcatagaactttttctcagtgtgaatgtgctgatgttctg 484

                                                                       
Query: 181 ttaagagacaagctgtggctgaaggccttgcgacagaccagtgtggattcataggttctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ttaagagacaagctgtggctgaaggccttgcgacagaccagtgtggattcataggttctg 424

                                                       
Query: 241 agtgaggtggatagcttgcagaaaggccctcccacattcattac 284
           ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 423 agtgaggtggatagcttgctgaaaggccctcccacattcattac 380


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)