BAC Information

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BAC

Clone NameMSMg01-233O13
Chromosome7 (Build37)
Map Location 86,762,164 - 86,762,324
singlet/doubletsinglet
Overlap geneRhcg
Upstream geneMrpl46, Mrps11, Det1, Isg20l1, Isg20, Acan, Hapln3, Mfge8, Abhd2, Rlbp1, BC025462, Polg, AI854517
Downstream gene5730590G19Rik, Plin, Pex11a, EG626359, EG665900, Mesp1, Mesp2, Anpep, Ap3s2, 2610034B18Rik, Zfp710, Idh2, Sema4b, Cib1, D330012F22Rik, LOC100042374, LOC100042379, Ttll13, Ngrn, Vps33b, Prc1, Rccd1, Unc45a, Hddc3, Man2a2, Fes, Furin, LOC384647, Blm, Crtc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-233O13.T7 (MSMg01no233_o13.b1)MSMg01-233O13.TJ (MSMg01no233_o13.g1)
ACCAG399965AG399966
length757738
length of high quality
(start - end)
---161 (421 - 581)
definitionCHROMAT_FILE: MSMg01no233_o13.b1 PHD_FILE: MSMg01no233_o13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:43 2005CHROMAT_FILE: MSMg01no233_o13.g1 PHD_FILE: MSMg01no233_o13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXGGGAATTATGGGAGAAGAAATTAGGTCTAAATTTGAGGTA
AGATATCACAGAGGAATGATTCTACGCCCTTGAGGTGGAGAGAAAAGAGG
AATTGGAGATATGGGAAGGAGAAATTAAGAGTCTGAGCTAAAGGCAGAGA
TTACTGTGGTGCATCTAAGGACTGAGGTGCGGGCAGGGGTGAATTACTCA
ACAGGGTGGCTGGGTGTGAAGAACTGAGCTCATATCCTCTGTAACAGACT
ATGCTCTTAATCATCCTAGAATTTTTTTTAATCTTTATTTATTATTATAT
GTTAGTACACTGTAGCTGTTTTCTCACCCCCCCCCACAAGACATCAGATC
TCATTATAGATGGTTGTGAGCCACCCCGCGGTTGCTGGGATTTGAACTTG
GGACCTTCAGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCAGCTCTCCA
GCCCCTTAGAATGTTTTTTACTGTAGGAAGTATATTGACAATAGCATAAC
TAGCTTACCAATACAAGGTTCTTTTTTTGTCCATTATTGCCTTATACAAA
TCTAAAGGTACCGCTAACCTCTTGCACAGTCCCCGCTGTTATGTTTACCT
TTCTGCCATATAGCCGCAATGTCTGTCATTTTGCCATGGACTTCCTATCC
TTTCCCATTTCCCCTGCGCCGCAATATCTGTACCTGCTCCGCGCGCCTGT
TTTTCTT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGATGAAGTTTATGATTGTTCTTT
TGAATTCTGTGTCCTGGTGTTAGCTTAGATAATTCTCATTGGCTAATAGG
ACTGGCAGATTTTAGAGAGTAGATACTGGCTTGATCTTTCATATTGTTTG
TATTTTTGTGATGAGACCTGGGCATGTACACTTTGTTAGTTCTGTGTCTG
ATAGGGACAGAGTGGGTTATTGCAGAAGAGAAGATGTGTCCATGTCTTGG
TTCTCTAGGTTGAAAATGGCTTATGTGGAATGGAGTTACTCGAACAGAGG
GGTCTGGGTTGGTGGTGGTGGATTTGTCAAAGCCAGGGGCGTACCTAATG
CGGAGCCCAGTCAGCCCCCCGCCCAACTAGCTAGGGTCTATCCGGAGACT
CCTTAAGTGAATCTGCGGGCCATAGGACTTACTCGGTTAGCGATAGTAAA
ACTCGTTCTCAACGTCGCTGGAGATGTTCTTGCGCTTCTTCTCCAACCAC
CAGTGAGCATCGGCCTGGATGTCGTATCGCACGAACACGCCAAAGAGAAC
CACCATGGTCACTTGCAGGATCAGGCAGGTGATGGGCAGCCGCCCCCGAA
GGTTGCTGTTCCAGGCCATGCTCCGCACTGCTGGCCGCTTGCTCTGAACG
CTGGTCTCCGAGACCAGGGAGACGCTTATAGGACCGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no233_o13.g1 MSMg01no233_o13.g1 CHROMAT_FILE:
MSMg01no233_o13.g1 PHD_FILE: MSMg01no233_o13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:43 2005
         (161 letters)



>mm_chr7_86761964_86762524
          Length = 561

 Score =  281 bits (145), Expect = 2e-80
 Identities = 157/161 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcccaactagctagggtctatccggagactccttaagtgaatctgcgggccataggactt 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcccaactagctagggtctatcaggagactccttaagtgaatctgcgggccataggactt 260

                                                                       
Query: 61  actcggttagcgatagtaaaactcgttctcaacgtcgctggagatgttcttgcgcttctt 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actcgggtagcgatagtaaaactcgttctcaacgtcgctggagatgttcttgcgcttctt 320

                                                    
Query: 121 ctccaaccaccagtgagcatcggcctggatgtcgtatcgca 161
           |||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 321 ctccaaccaccagtgagcatcggcttggatgtcgtagcgca 361


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 161
Length of database: 561
Length adjustment: 8
Effective length of query: 153
Effective length of database: 553
Effective search space:    84609
Effective search space used:    84609
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)