BAC Information

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BAC

Clone NameMSMg01-234E14
Chromosome7 (Build37)
Map Location 53,538,477 - 53,574,774
singlet/doubletdoublet
Overlap geneOtog
Upstream gene1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb, Ruvbl2, Gys1, Ftl1, Bax, Dhdh, Nucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1, EG545963, Lmtk3, Pscd2, Kcnj14, Grwd1, Grin2d, Kdelr1, Syngr4, Tmem143, Emp3, BC013491, LOC677321, Abcc6, Nomo1, Kcnj11, Abcc8, Ush1c
Downstream geneMyod1, Kcnc1, Sergef, Tph1, Saal1, Saa3, Saa4, LOC100040106, Saa1, Saa2, Hps5, Gtf2h1, EG668838, EG384622, Ldha, Ldhc, Tsg101, Uevld, C86187, LOC384623, ENSMUSG00000056509, Spty2d1, LOC100040174, Tmem86a, Ptpn5, LOC100041710, Mrgpra6, EG668725, Gm660
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-234E14.T7 (MSMg01no234_e14.b1)MSMg01-234E14.TJ (MSMg01no234_e14.g1)
ACCAG400226AG400227
length708715
length of high quality
(start - end)
225 (113 - 337)287 (57 - 343)
definitionCHROMAT_FILE: MSMg01no234_e14.b1 PHD_FILE: MSMg01no234_e14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:13 2005CHROMAT_FILE: MSMg01no234_e14.g1 PHD_FILE: MSMg01no234_e14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,574,551 - 53,574,774)(53,538,477 - 53,538,761)
sequence
CGACTCCTATTTTTCGAGCTGCGCGGAATTCAAAGAGATTTCGAAAGAAG
AGACACTGCATGGCTGCACAAAGCTGTTCCTAGGATTATGCAGTTAAGAC
ACAGAGGGAGGGGATAATATCTTCCTTATGAGTTGTTACAGGTCAGAGAA
GCCCCAGGGGCTTCTTGCCATCCCTCTTGGTTGCCCATGGACTTAGCTAA
TGCCCAGTTGCTCATTCCACTGTATTAATTTATCATTAAACAGGGCAAAG
ATGTCACAGGGGAAAAATAGAGAGCATTGCTCTTTATAAGAAGATTTGCT
GAATTTCTTAACAAAAGTTACCTATGCCAATTCCACTTTTTTTTATGCTC
GCTACCACACATAATGAACAAGAGGGCTTTAGACTGGAATGCNNGGCCCA
AAAAAAAAAAAATATCATCTGGGGGGGGCATTGTGTTAACTGAATAAAGC
CATGTCAGTGTGTTACTGCTGTAAATAGACCAAAGCAACTCTTATAAAGG
ACAATGTTTAATTGGGGATGGTTTACAGGGTCAGAGATTCAGTCCATTCT
CATCAAGGTAGGAGCATGGTGGCATCCAGGCAGACATGGTGTTGGAGGAG
CTGAGAGTTCTACATCTTTATCCAAAGGCTTTTTATGACTAGCTTCCAGG
CAGTTAGGAGGAGGGTCTTCAAGCCCACTCCCAATGTGAGATCCTTCTTC
CTGCCAGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGGTGTGACAGGACCCCTTGTGGGGTAGAGGGCAAAGCAGGGGT
CCAGTATGGCAGAGCCCTGAATTAAAGCTGTGCTCTTAAGACTCTGTCTT
GGGGATGAGGAAAGCCACAGGGGACAGTGGCTAGGAAGGTGACCCAGACA
CCTATGGGACACAGCAGAGGCAGGAAAACCATTTATCGAGCTGTCACAAA
TGTCTAGGACACCTACATGCCTTCCACCCTCTACCCACAGCTCCATCTCC
TCCAAACACAAACAACACATGTGTATGAAATACACAGATACAAATTGAGT
TCTGGGCTCCTGACTGTCATCCCTCAGGACGAGGTGGGCAGAGACCAGTG
TATTGTATTTTCCCAAAGGCAGCTTTGACAAAACAATGTCTGCTATGGTA
GTGGCCCATGCTTTCAGGGGTGACTGTCATGGGCTCCCTGTGCAATGGCT
TAAGCACAGAGGGAGGGTCTGTCTCCTTTGGGACTGCTAGCCTGGGGATC
CTGCCTCTTCAGATCTACTAAGGCTCCTGTAAGCCATCAAGAGGCCCTCT
CCAGCACCCTGACTCTTCTGAACTTCTGATTGGTGGTACATGTGAGTTGG
GCGGTGACACTTGTGACAGAGACTTTTCTCTCCAGCGCTAGGTAAGGGTC
CCTACCAGCTGTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no234_e14.b1 MSMg01no234_e14.b1 CHROMAT_FILE:
MSMg01no234_e14.b1 PHD_FILE: MSMg01no234_e14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:13 2005
         (225 letters)



>mm_chr7_53574251_53574875
          Length = 625

 Score =  371 bits (192), Expect = e-107
 Identities = 216/224 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   gataatatcttccttatgagttgttacaggtcagagaagccccaggggcttcttgccatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 524 gataatatcttccttatgagttgttacaggtcagagaagccccaggggcttcttgccgtc 465

                                                                       
Query: 61  cctcttggttgcccatggacttagctaatgcccagttgctcattccactgtattaattta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |
Sbjct: 464 cctcttggttgcccatggacttagctaatgcccagttgctcattccactgtattaagcca 405

                                                                       
Query: 121 tcattaaacagggcaaagatgtcacaggggaaaaatagagagcattgctctttataagaa 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 gcattaaacagggcaaagatgtcacaggggaaaaatagagagcattgctctttataagaa 345

                                                       
Query: 181 gatttgctgaatttcttaacaaaagttacctatgccaattccac 224
           || |||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 344 gagttgcagaaattcttaacaaaagttacctatgccaattccac 301


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 225
Length of database: 625
Length adjustment: 9
Effective length of query: 216
Effective length of database: 616
Effective search space:   133056
Effective search space used:   133056
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no234_e14.g1 MSMg01no234_e14.g1 CHROMAT_FILE:
MSMg01no234_e14.g1 PHD_FILE: MSMg01no234_e14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:14 2005
         (287 letters)



>mm_chr7_53538275_53538961
          Length = 687

 Score =  520 bits (269), Expect = e-152
 Identities = 281/285 (98%)
 Strand = Plus / Plus

                                                                       
Query: 3   gtgtgacaggaccccttgtggggtagagggcaaagcaggggtccagtatggcagagccct 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gtgtgacaggaccccttgtggggtagagggcaaagcaggggtccagtatggcagagccct 262

                                                                       
Query: 63  gaattaaagctgtgctcttaagactctgtcttggggatgaggaaagccacaggggacagt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gaattaaagctgtgctcttaagactctgtcttggggatgaggaaagccacaggggacagt 322

                                                                       
Query: 123 ggctaggaaggtgacccagacacctatgggacacagcagaggcaggaaaaccatttatcg 182
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 323 ttctaggaaggtgacccagacacctatgggacacagcagaggcaggaaaaccatttattg 382

                                                                       
Query: 183 agctgtcacaaatgtctaggacacctacatgccttccaccctctacccacagctccatct 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 agctgtcacaaatgtctaggacacctacatgccttccaccctctacccacagctccatct 442

                                                        
Query: 243 cctccaaacacaaacaacacatgtgtatgaaatacacagatacaa 287
           ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 443 cctccaaacacaaacaagacatgtgtatgaaatacacagatacaa 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)