BAC Information

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BAC

Clone NameMSMg01-234O17
Chromosome7 (Build37)
Map Location 28,049,358 - 28,049,607
singlet/doubletsinglet
Overlap geneNumbl
Upstream geneCyp2a4, Nlrp9c, LOC100043195, Nlrp4a, Nlrp9a, V1re12, EG243881, LOC623830, Cyp2b19, Cyp2g1, LOC100043745, Cyp2a5, EG233005, EG330491, Cyp2a12, LOC100043199, Cyp2f2, Gm1450, Egln2, Rab4b, Mia1, Snrpa, Itpkc, Adck4
Downstream geneLtbp4, Shkbp1, Spnb4, Blvrb, EG668045, Sertad3, Sertad1, Prx, Hipk4, Pld3, 2310022A10Rik, Akt2, Ttc9b, Map3k10, C030039L03Rik, Zfp60, LOC100043229, LOC100043233, 4933426I21Rik, Zfp59, 4732475C15Rik, Prkcz2, 1700049G17Rik, EG668175, LOC100043771, Zfp780b, C130069I09Rik, LOC100043772, Psmc4, LOC100043774, 9530053A07Rik, Fbl, Dyrk1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-234O17.T7 (MSMg01no234_o17.b1)MSMg01-234O17.TJ (MSMg01no234_o17.g1)
ACCAG400659AG400660
length755793
length of high quality
(start - end)
237 (131 - 367)250 (73 - 322)
definitionCHROMAT_FILE: MSMg01no234_o17.b1 PHD_FILE: MSMg01no234_o17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:03 2005CHROMAT_FILE: MSMg01no234_o17.g1 PHD_FILE: MSMg01no234_o17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTACGGATCCGCGGA
ATTCCAAGCCCATGGTCTCCTCAAGGACTTTCTAGGACTGTTGGAACACT
GGTGAAGGCTTAGCTATGTCTTATTTCCATCTTAAAAGGCACTTATAATA
AGATAATACTAAAAGAGAGCATGTGGATTCATACACCAGACTAACGCGGG
AATGGAATATGAATGTATGGGTTAGAGAGAACGCCAGCCTCCAGGAGGTA
AGTTTCCGTGAAACTCTCTGCCTTGTGAGTGGCTTCCAGGCCTCTCGGCC
TGTCAAGCTGACTCGAACAGAGTGCGTGGTTTAGATAGACATGGAGCAAT
GATCCAGGTCTACTATCTTTTTTGTATAACCTGACTCCCCAGGTCATGCC
TCCAATCCACTGGGCAAGGGCATAACTTTTTCCCATGAATGAGAACTGCA
GTTTCACACGATCTAAGTCTGTAGACTTGCCTTTCTGATTTCTGTATAGC
CCCATTACCACATGTTCGCCTGGCCCCTTATTTGATAAGAAAACTAACCC
ATCCCCGGAGGGCTCAACGGCCCATTTCCAATCTCCATCATTTGAGGTAA
CACAACTCCACTGACTGCAAAAGTACCACCTAGGTCCCCCACACCAGGAA
ATCTTATGGTGCTTGGGGCAGCTATAGAACCCATAGCTTCTGACCTCTTT
AGGGTTAGTACTCCCAGCCACAGGGATAATTTGGCGTATGCAAAAATACC
GGGCT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACAGCACTGGAGTTTAAGGATGCAGGGG
TCATAAGGTCATGGGTGTTGAGGGTATGAGGGTCAGGGAAGAAGGTAATC
GAGGGTAAGGACATGAAGCTAGGTGGCAGAGTGCTTGCCTAGCATGCAAG
GCCAGGGGGCCAACCCCTAGAGTAGGAGAGAGGGAGGGACAGAGACAGAG
AATGTAATGCGTGTACGGGCCTCTGACTACTAAGTACAGATGAAGCAAGG
CCTCAGGGGTGGTGTGTGTTGGGTGTGTTTTGCTCTATCTCTCCCCNTTT
TTCTCNNCCACCCATTTTGNGTAGTTCCCAAAGCAAAACCTTTTTTTTTT
TTTTTTTTAGTTTTGTTGGGGTGCCCCCCCCTTTAAAATACAAAAAATTT
TGGCTTGGGGGGGGGCTTCTCCCCCTTTTTCCCCCCCTCCCTCCCTTTTT
TCTTTTTTATCCCTTCCCCCCTCTTTTTTTTCCCTTTCCTATACTCTTTC
CCCTTTCCCCCCTTCCCTTCTTTTTGTTTCCNCCCTTCCCTCCCCCTTTT
TTTTTTTTTTTTTTCCCCTTTCCCTCTTTTCCCTCCCTTACCCTTTTTTT
TCCTCCCTTCTCCTTCTTCTCCTTTTTTTCCCTTCTTTTTTCTTTTCCCT
TTCCCTTGTCCTATTCCTCCCCCCCCCCCCTTTTTTATTCTCCTTCTTCT
TTTCCTTCTCCTTTGCCCTTCCTTTCCCTCTTATTTTTTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no234_o17.g1 MSMg01no234_o17.g1 CHROMAT_FILE:
MSMg01no234_o17.g1 PHD_FILE: MSMg01no234_o17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:04 2005
         (250 letters)



>mm_chr7_28049010_28049659
          Length = 650

 Score =  468 bits (242), Expect = e-136
 Identities = 248/250 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagcactggagtttaaggatgcaggggtcataaggtcatgggtgttgagggtatgaggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 acagcactggagtttaaggatgcaggggtcataaggtcatgggtgttgagggtatgaggg 539

                                                                       
Query: 61  tcagggaagaaggtaatcgagggtaaggacatgaagctaggtggcagagtgcttgcctag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 tcagggaagaaggtaatcgagggtaaggacatgaagctaggtggcagagtgcttgcctag 479

                                                                       
Query: 121 catgcaaggccagggggccaacccctagagtaggagagagggagggacagagacagagaa 180
           |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 478 catgcaaggccagggggccaactccaagagtaggagagagggagggacagagacagagaa 419

                                                                       
Query: 181 tgtaatgcgtgtacgggcctctgactactaagtacagatgaagcaaggcctcaggggtgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tgtaatgcgtgtacgggcctctgactactaagtacagatgaagcaaggcctcaggggtgg 359

                     
Query: 241 tgtgtgttgg 250
           ||||||||||
Sbjct: 358 tgtgtgttgg 349


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)