Query= MSMg01no235_j22.b1 MSMg01no235_j22.b1 CHROMAT_FILE:
MSMg01no235_j22.b1 PHD_FILE: MSMg01no235_j22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:59 2005
(664 letters)
>mm_chr7_89014134_89015199
Length = 1066
Score = 855 bits (442), Expect = 0.0
Identities = 469/480 (97%), Gaps = 6/480 (1%)
Strand = Plus / Minus
Query: 4 ggaattctgctgcgg--gtactcccccaaagagcccatgtgctgtgagatacagctagtt 61
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ggaattctgctgcgggagt--tcccccaaagagcccatgtgctgtgagatacagctagtt 421
Query: 62 tgtcacagcaaagggtactgccacccccaaaacagcaactgtcacaaaatcttacctcat 121
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tgtcacagcaaagggtactggtacccccaaaacagcaactgtcacaaaatcttacctcat 361
Query: 122 ttctttaataacacagtcatgctcccagaggggccagccacacagatttgaggggtaacc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ttctttaataacacagtcatgctcccagaggggccagccacacagatttgaggggtaacc 301
Query: 182 caaatgtgtgtgtgtgt--gcaatttcccaagccctggggccacacctgaacttgaggag 239
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct: 300 caaatgtgtgtgtgtgtgcgcaatttcccaagccctggggccacacctgaacttgaggcg 241
Query: 240 aaactctgacctgagaccagaagaaccatggaagtacaaggtgcttgactttggctcctt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 aaactctgacctgagaccagaagaaccatggaagtacaaggtgcttgactttggctcctt 181
Query: 300 gtgaacttgagttcagatccctagcacccaaatgaaaagccgagactggtgttgtgcacc 359
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 180 gtgaacctgagttcagatccctagcgcccaaatgaaaagccgagactggtgttgtgcacc 121
Query: 360 agggggaaggcagagacaaggaagaccccaggggcttgctggccagccaacctagccaaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 agggggaaggcagagacaaggaagaccccaggggcttgctggccagccaacctagccaaa 61
Query: 420 atggcgagctcctacctcagcgagataccctacctctaactataagatggtgagccaaca 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 atggcgagctcctacctcagcgagataccctacctctaactataagatggtgagccaaca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1066
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1056
Effective search space: 690624
Effective search space used: 690624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no235_j22.g1 MSMg01no235_j22.g1 CHROMAT_FILE:
MSMg01no235_j22.g1 PHD_FILE: MSMg01no235_j22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:00 2005
(294 letters)
>mm_chr7_88853103_88853794
Length = 692
Score = 553 bits (286), Expect = e-162
Identities = 290/292 (99%), Gaps = 2/292 (0%)
Strand = Plus / Plus
Query: 1 caaagaccagggctgtgccaaggtgctgaagggaaggggtcactggtaaagtcccagaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaagaccagggctgtgccaaggtgctgaagggaaggggtcactggtaaagtcccagaaa 260
Query: 61 gaagccagaagtaggaggatcaaaagcaggagccagcaaatgtgtgttaggggtatggaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaagccagaagtaggaggatcaaaagcaggagccagcaaatgtgtgttaggggtatggaa 320
Query: 121 aacaagactctctgagcaaaggagcccagtggtgttcaagccctggctgggaggtccatc 180
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacaagactct--gagcaaaggagcccagtggtgttcaagccctggctgggaggtccatc 378
Query: 181 tctttgctcctcagatagacagggtgcacccacatcaccttggcaggatgcaatgaggcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tctttgctcctcagatagacagggtgcacccacatcaccttggcaggatgcaatgaggcc 438
Query: 241 aagcaggtggggtggtgaatcgcagccagtgctctgtggttaaattggctgt 292
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aagcaggtggggtggtgaatcgcagccagtgctctgtggttaaattggctgt 490
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 692
Length adjustment: 9
Effective length of query: 285
Effective length of database: 683
Effective search space: 194655
Effective search space used: 194655
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
