BAC Information

Click to search

BAC

Clone NameMSMg01-236A05
Chromosome7 (Build37)
Map Location 13,381,777 - 13,382,426
singlet/doubletsinglet
Overlap geneLOC100042515
Upstream geneEG628898, V1rg5, V1rg6, LOC665999, V1rg4, LOC100042423, LOC628946, LOC100043075, LOC100042433, V1rg7, LOC100042437, V1rg3, LOC100042446, LOC100043092, V1rg9, V1rg12, V1rg8, V1rg11, Zfp551, EG666065, Zfp606, 2900092C05Rik, EG637908, EG666085, Vmn2r55, LOC629079, LOC629081, EG232875, LOC100043128
Downstream geneZfp329, Zfp110, Zfp128, Zscan22, Rps5, 2310014L17Rik, 1810019N24Rik, Zfp324, Zfp446, Slc27a5, ZBTB45, LOC100042553, Trim28, Chmp2a, Ube2m, Mzf1, V1rj3, LOC100043156, V1rk1, LOC666177, EG232887, V1rj2, 6330408A02Rik, Lig1, Pla2g4c, LOC666225, Cabp5, LOC666232, Gm767, LOC666243, 9230107M04Rik, EG666256, LOC666267, LOC100042624, LOC100043194, Sult2a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236A05.T7 (MSMg01no236_a05.b1)MSMg01-236A05.TJ (MSMg01no236_a05.g1)
ACCAG401400AG401401
length732764
length of high quality
(start - end)
663 (70 - 732)109 (127 - 235)
definitionCHROMAT_FILE: MSMg01no236_a05.b1 PHD_FILE: MSMg01no236_a05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:28 2005CHROMAT_FILE: MSMg01no236_a05.g1 PHD_FILE: MSMg01no236_a05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACACTGGTTCGAGACTGGGAAGTGGGTAGAGTTGGAAAAATCCTTC
AACGGCAGTGGTCACCTCATTCCATGTTAAGGAAAACAAACAAACAAACA
AACAAACAAAAACCCAGAAGCAACCAAAATCCTTAACAGAAAGAAGTCCC
TCATGTACAAAGAGTGCCTCTGCCAGGCGTCAGAGGATTCATACTGCCTC
TGCTGAGAAGCCTTGGGGAGTTTTAACTACTGTGGCAAAGCCTTCAGGAA
GAGCCCCTCCCTGACCAAGCAGCAGGAGTCACATATGCATGAGGTCTTTT
GCTAGGTGTTCCAACAGGAGAAATTTTCAGTGCACCATTTTCCCAGGTTA
AATACAGAGACGTCACACTGTAGCAATTTCTGGGAGACTCAGTGAACAGG
GGTGGCAGTGACTATCAGCATCTCTTTAGTTACTGTTAAAATTTATACTC
AAGTGTAGTTTGAAAACATAGCAACTCACCATCTAGTCCATGGAATAGAA
CCCATGAGACATTATATCTCTAATAAACTGGAATTATTTTGCTCCTGTAC
AACAGACTGAAAATGAACCTTAGAAACATAATGAATTAAAACCATCTGAG
TTTACTCTTCACTAAATCTAAGACCAGGAAAAATTTGAATGCTGGTGACA
GGATCGAGAGAAGAGGAAGCCTTTATTCTTAC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGTTTCCTATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGNATGTGNNGAGAAAGA
AGCAACACTCCTTCTCAATTGGTTTTGGGGGGGGGGGAAATTTGGGCANN
AGGGCCTTTTTTTTTTTTTTTTTTCAACCCCACACCAAATAAACACATCC
CCCCCCCCTTTCCGTTCGGCCACTCTCAAGCGCATTATAGCGATTGAATT
CTAATTTTGCTAAATTCTGATGCCCCTCCTTCCACTCCCGGGCACCACAT
AATACTGACTGTTGCTTTTGGCAAGTTGAGGGGGGGGATCCGGTTGGACG
ATGAGTACAGGAACGCGTATATCAACTCGATCGGCCGATAATCTGGATGT
TATACAATGGTAGTTGCAACTGAATGCATACTATTTCCCTACTGTGATGG
TGTATCACCTTTTCATATTTTCCCTCGATTTACCCATATTGCATTCAACT
TTTATTCCTTATATCTGTTACCCCCTATTATTAGACACGCTCCCCCCCTA
TATACTTACCCCCTACTTATATATCCGTCGGTATCTTAGCCCCCATTACN
ATTTTGAAATGTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_a05.b1 MSMg01no236_a05.b1 CHROMAT_FILE:
MSMg01no236_a05.b1 PHD_FILE: MSMg01no236_a05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:28 2005
         (663 letters)



>mm_chr7_13381479_13382539
          Length = 1061

 Score = 1156 bits (598), Expect = 0.0
 Identities = 643/664 (96%), Gaps = 15/664 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgggaagtgggtagagttggaaaaatccttcaacggcagtggtcacctcattccatgtta 60
           ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 948 tgggaagtgggtagagttggaaaaatccttcaatggcagtggtcacctcattgcatgtta 889

                                                                       
Query: 61  aggaaaacaaacaaacaaacaaacaaacaaaaacccagaagcaaccaaaatccttaacag 120
           ||||||||||||||||||          ||||| ||| ||||||||||||||||||||||
Sbjct: 888 aggaaaacaaacaaacaa----------aaaaa-ccaaaagcaaccaaaatccttaacag 840

                                                                       
Query: 121 aaagaagtccctcatgtacaaagagtgcctctgccaggcgtcagaggattcatactgcct 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 839 aaagaagtccctcatgtacaaagagtgcctctgccaggcatcagaggattcatactgcct 780

                                                                       
Query: 181 ctgctgagaagccttgg-ggagttttaactactgtggcaaagccttcaggaagagcccct 239
           |||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 ctgctg-gaagcc-tggtggagttttaactactgtggcaaagccttcaggaagagcccct 722

                                                                       
Query: 240 ccctgaccaagcagcaggagtcacatatgcatgaggtcttttgctaggtgttccaacagg 299
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 721 ccctgaccaagcagcaggagtcac-tatgcatgaggtcttttgctaggtgttccaacagg 663

                                                                       
Query: 300 agaaattttcagtgcaccattttcccaggttaaatacagagacgtcacactgtagcaatt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 agaaattttcagtgcaccattttcccaggttaaatacagagacgtcacactgtagcaatt 603

                                                                       
Query: 360 tctgggagactcagtgaacaggggtggcagtgactatcagcatctctttagttactgtta 419
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 602 tctgggagactcagtgaacaggagtggcagtgactatcagcatctctttagttactgtta 543

                                                                       
Query: 420 aaatttatactcaagtgtagtttgaaaacatagcaactcaccatctagtccatggaatag 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 542 aaatttatactcaagtgtagtttgaaaacatagcaactcaccatctagtccatggaatat 483

                                                                       
Query: 480 aacccatgagacattatatctctaataaactggaattattttgctcctgtacaacagact 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 aacccatgagacattatatctctaataaactggaattattttgctcctgtacaacagact 423

                                                                       
Query: 540 gaaaatgaaccttagaaacataatgaattaaaaccatctgagtttactcttcactaaatc 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 gaaaatgaaccttagaaacataatgaattaaaaccatctgagtttactcttcactaaatc 363

                                                                       
Query: 600 taagaccaggaaaaatttgaatgctggtgacaggatcgagagaagaggaagcctttattc 659
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 taagaccaggaaaaatttgaatgctggtgacaggatcgagagaagaggaagcctttattc 303

               
Query: 660 ttac 663
           ||||
Sbjct: 302 ttac 299


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1061
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1051
Effective search space:   686303
Effective search space used:   686303
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)