BAC Information

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BAC

Clone NameMSMg01-236B09
Chromosome7 (Build37)
Map Location 128,081,944 - 128,082,192
singlet/doubletsinglet
Overlap genePolr3e
Upstream geneDnahc3, Tmem159, Zp2, Anks4b, Crym, Abca14, Abca15, Abca16, LOC668429, LOC546994, LOC100042914, E130201H02Rik, LOC637957, Uqcrc2, 4930408O21Rik, BC030336, E030013G06Rik, EG436008, LOC100043426, Eef2k
Downstream geneCdr2, 4933427G17Rik, EG668548, Mettl9, LOC668456, Igsf6, Otoa, LOC668556, Hs3st2, Usp31, Scnn1g, Scnn1b, Cog7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236B09.T7 (MSMg01no236_b09.b1)MSMg01-236B09.TJ (MSMg01no236_b09.g1)
ACCAG401454AG401455
length732811
length of high quality
(start - end)
249 (74 - 322)48 (118 - 165)
definitionCHROMAT_FILE: MSMg01no236_b09.b1 PHD_FILE: MSMg01no236_b09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:34 2005CHROMAT_FILE: MSMg01no236_b09.g1 PHD_FILE: MSMg01no236_b09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGA
ATTCAGCACCATTATCATGACACTATGCATGGAGACATTCCACTGTGGCA
GCAACTGGTAGTTGGCATGTCTTCCCAGAGGCTCCAGCTCCCACAGCTCT
CGCTGCCTCATCAGCTGTCATGTCCCTGACCTACCTCACAGGAATACTCT
CGAGAGGGGAAGTATTCTCAGTATTCACTGAGAGCCAAGAGGAAAGGATG
GCTACTTGTTGTCTATAGTAACACTTCGTATACACTTGCGGGCTCCAACC
CAACGGTATGCGAACACTAGAAAATTTGTCAAAGCCAAAGGGCACTTGGC
ATGAGTGAATGAGGTCGGCTGGGAGCTGCACTCCTATGCCCCAAGTCAGA
CTCCGGAGGCCCCTCAACACAGACGTCCCCAAAAGCTAAGAATACCTAGT
CAGAAGAGCAAACACAGCTGTCCTCAAACAATCTAAGGACTGCTTCCCTT
CAGGACAAGCCTGTGCAGGGCACAAGGGCCCACATGAACAGCTCTAAGCA
GCCACATTTCAGCAAATTCAATGTGTAAATGCCAAGGGTTAGAGGGCACT
ACAGATTCCAGAGACTTGAGCTTAAAGACCCTGGGAGGGACTTACGCTCT
GGACATCAAACAGGGTAGGGTGAGAGACAGGAAGGATGACTTAACTCAGA
AGTCACTAACCCCAGAAAAGTAGCCAGGAACA
CTTAAAGAATNCTCCTTTCTTTTCTCCCTTTCTCCTTTCTTCCCTCCATT
CTACTGTNACTCCTGTCGCCCGCCTGCCCTTCCACTTTTTGTGACTCTTT
CCAAGGATTCCCGCTAATTCCTGTGTATAGCTGGCCTCGGACTCTCTTAT
ATCCACCTGCCTCTTCCTTCTGANCGCTGGCATAAAATGTGTGCACCACT
GCACCATCTGATCGCTGAGTCGTTTTACCTTTGCTTATCATGAACCATCC
CATTAACCATACATTTTGCTGCTGCCACACAGTACTCCTCTTTTTACACC
CCTCTCTGCTCTTCTCATTACCCNTTTTGATTCCCATTTTCTCCCTTGTC
GCTTTCTCCCCTTTCCCTCGCTCTTTTCCCTCGCATTTTTACCCCTCTTT
TGGCCTGCCTTTTTTTTTCCTCCCCGCCCCCCCCCACCCTTTTTTCCCTC
CCCCCTCCCCACATTTTCCCTCCCCTTTTTATGACACAAGCCCTAATTCC
CTTTTCCCCCCCCCTCCTCCCCTGTCTTTTTTTTTCCTTTTTTCCCCCCT
CCCCCCTCTCCCCCCTTTCTCTTCTTNTTTTTATTTTCCCCCCTCCCTCC
CCTCCCCCTTATTACCCCCCCCTTTTCCATTTTTTTTCCCCCCCTTTTTA
TGACGCCTAAACCCCTTTTTTTCTTTCCCCCCCTTTTTCCTTTCCCCTTT
TGCCCCTTCCCTTTTATATCCCTTTCCCCCCCTTTTTTTCCTCCTTTTTT
TCCCGCAGCGAGATGAACATTCTGAAGGCTTNCCTTTTTTTAACACAGAA
AAGAAAGATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_b09.b1 MSMg01no236_b09.b1 CHROMAT_FILE:
MSMg01no236_b09.b1 PHD_FILE: MSMg01no236_b09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:34 2005
         (249 letters)



>mm_chr7_128081744_128082392
          Length = 649

 Score =  474 bits (245), Expect = e-138
 Identities = 248/249 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatgcatggagacattccactgtggcagcaactggtagttggcatgtcttcccagaggct 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 449 tatgcatggagacattccactgtggcagcaactggtagttggcatggcttcccagaggct 390

                                                                       
Query: 61  ccagctcccacagctctcgctgcctcatcagctgtcatgtccctgacctacctcacagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ccagctcccacagctctcgctgcctcatcagctgtcatgtccctgacctacctcacagga 330

                                                                       
Query: 121 atactctcgagaggggaagtattctcagtattcactgagagccaagaggaaaggatggct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 atactctcgagaggggaagtattctcagtattcactgagagccaagaggaaaggatggct 270

                                                                       
Query: 181 acttgttgtctatagtaacacttcgtatacacttgcgggctccaacccaacggtatgcga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 acttgttgtctatagtaacacttcgtatacacttgcgggctccaacccaacggtatgcga 210

                    
Query: 241 acactagaa 249
           |||||||||
Sbjct: 209 acactagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)