BAC Information

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BAC

Clone NameMSMg01-236F23
Chromosome7 (Build37)
Map Location 142,951,997 - 142,952,431
singlet/doubletsinglet
Overlap genenone
Upstream geneDock1, B830028B13Rik, EG668693, LOC100043254, Foxi2, Clrn3, Ptpre, Mki67
Downstream geneLOC668764, LOC546009, EG621677
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236F23.T7 (MSMg01no236_f23.b1)MSMg01-236F23.TJ (MSMg01no236_f23.g1)
ACCAG401647AG401648
length706795
length of high quality
(start - end)
435 (50 - 484)120 (235 - 354)
definitionCHROMAT_FILE: MSMg01no236_f23.b1 PHD_FILE: MSMg01no236_f23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:55 2005CHROMAT_FILE: MSMg01no236_f23.g1 PHD_FILE: MSMg01no236_f23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GACTCCTATAGTTCGAGAATCCGCGGAATTCACACTCACATTGCTCTCCC
AGGTCTGGAGGAGAGAGACCTTGGATTGCAGCGCCAACGATGCTTCCTGC
ATCTCATTTCTGACACCCCGCCAGCTCAGGAAAGATTTCATAATTAAAAA
TGTAAAAATGTTAATTACCTGAAGTTACTTCCTGATGAGTAGCACTGATC
AGAAGGGAAATTGATGGTATTAAAACAGGAAAAATGATTAGATCAAGCAA
TATTCATGGGACATGGATCTCATAAGAACTCTGTGTGTGGCCAGGCAGGT
TTGGATCTGTGTATTGTGTTTTCTGAGAAGAGAATACATTGAATCTAGAC
CCAGAGATGCACGATGAAATGAGCAGACAGTGACAAGGACATGCCTTCCT
GGTCAGCAAAAGGCTTGGAGATGCGGGCTGGATGCAGGGATGCAGGCTGG
ATGCAGAGGGATGGAAGTGCCTGGAAGGCGGGCAGTCCTGGTAGTGATGG
TGAGATTCTGAGGAGGCACTAGGTGGTAGTCAGTCAGCTGGAGTCCCCAG
CTATGTGATGGTGCACCTGGTAGGTGTGTTGCCCATACTGTTGGGTTCCT
GGTTGCCTGGCGAATGCTTGCCAAGGTCCAGAGGACACATTAGTAGATTT
ATGCATCTTACGCCTTCTGCCTCAGCTGCTTATCTCTGTCGTTTATATCT
GAGAGT
ATTTCTCCCCTTTCTCCCTTTCTTTTCTTCCATTTTTATTTATTTCCTTT
TACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAATCACTAAAAATGTGGGTACAG
ATATGGCCCCTACATTAGGAGCTTTACCCCCGACACATAGATTTCTATAA
AGCTGCTATACAGCTGCACAACGGTCTTCACAAATAGTTACCCAATAAAG
ACCACACTCTCCCCACCCACCCTGTGAGTGTGTATGTGTATGCACATGTG
TGCACACATGTACACACACACACATACACACACACACACATTTTCACACA
CATGAACTGGGCATAAGACAAAAAAGAAAGATACTCCAAGTCCAGAGCTG
GTCTTCCCAGAAGCCTCTGATTTTTTTTCTCCCCCCCCCCACAATTATGG
TTTGGCCACGTTTATTGACACTGATTAGGGTGACAAAAAAAAAACGATGT
TTGACAGCAGTAACTCTACCTAATTGACAACCCAATCATTCATGCCCTCA
GCTTTCTTTTCTGTAAATAACATGTGGAGATTAGACCACCCCCTCACAAC
CCAGAATGACCACACACTAGCTCACTATAATTAGACCCCACATTTGTTTG
CTTCGCCACTTCTGTTATCGGCCCTGGATTGCGTTAAGCTTAATGTAACT
TGGGATTAATTCCTCTCACGCCCTATATTTCGAATTGTTAGCCCCTCTCT
GTTACCATGGAAGCATTAATAGTATAGGGGGCTGATGGTCGCCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_f23.b1 MSMg01no236_f23.b1 CHROMAT_FILE:
MSMg01no236_f23.b1 PHD_FILE: MSMg01no236_f23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:55 2005
         (435 letters)



>mm_chr7_142951797_142952631
          Length = 835

 Score =  803 bits (415), Expect = 0.0
 Identities = 430/435 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggtctggaggagagagaccttggattgcagcgccaacgatgcttcctgcatctcattt 60
           ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 201 caggtctggaggagagagaccttagattgcagcaccaacgatgcttcctgcatctcattt 260

                                                                       
Query: 61  ctgacaccccgccagctcaggaaagatttcataattaaaaatgtaaaaatgttaattacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgacaccccgccagctcaggaaagatttcataattaaaaatgtaaaaatgttaattacc 320

                                                                       
Query: 121 tgaagttacttcctgatgagtagcactgatcagaagggaaattgatggtattaaaacagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaagttacttcctgatgagtagcactgatcagaagggaaattgatggtattaaaacagg 380

                                                                       
Query: 181 aaaaatgattagatcaagcaatattcatgggacatggatctcataagaactctgtgtgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaaatgattagatcaagcaatattcatgggacatggatctcataagaactctgtgtgtg 440

                                                                       
Query: 241 gccaggcaggtttggatctgtgtattgtgttttctgagaagagaatacattgaatctaga 300
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gccaggcaggtttggaactgtgtattgtgttttctgagaagagaatacattgaatctaga 500

                                                                       
Query: 301 cccagagatgcacgatgaaatgagcagacagtgacaaggacatgccttcctggtcagcaa 360
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cccagagatgcatgatgaaatgagcagacagtgacaaggacatgccttcctggtcagcaa 560

                                                                       
Query: 361 aaggcttggagatgcgggctggatgcagggatgcaggctggatgcagagggatggaagtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaggcttggagatgcgggctggatgcagggatgcaggctggatgcagagggatggaagtg 620

                          
Query: 421 cctggaaggcgggca 435
           ||||||||| |||||
Sbjct: 621 cctggaaggtgggca 635


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 835
Length adjustment: 9
Effective length of query: 426
Effective length of database: 826
Effective search space:   351876
Effective search space used:   351876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)