Query= MSMg01no236_g04.b1 MSMg01no236_g04.b1 CHROMAT_FILE:
MSMg01no236_g04.b1 PHD_FILE: MSMg01no236_g04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:56 2005
(604 letters)
>mm_chr7_138726175_138727178
Length = 1004
Score = 988 bits (511), Expect = 0.0
Identities = 530/539 (98%), Gaps = 8/539 (1%)
Strand = Plus / Plus
Query: 1 cttgatggctggcacctttacgtgctgagctgtctcaccagtcatcaactgttttcttac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttgatggctggcacctttacgtgctgagctgtctcaccagtcatcaactgttttcttac 260
Query: 61 ccattccttgttttgtgtttacagacttcaactacatcacttcacagattgcttcatttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccattccttgttttgtgtttacagacttcaactacatcacttcacagattgcttcatttg 320
Query: 121 cctctctgaacgcttcaaacacgatctttggtcgctagaactgaaaattcaatatggaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctctctgaacgcttcaaacacgatctttggtcgctagaactgaaaattcaatatggaat 380
Query: 181 aaaaaacatcttgttttgctttgttgtttagtttttaactttaaaaagctaccgtatgtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaaaacatcttgttttgctttgttgtttagtttttaactttaaaaagctaccgtatgtg 440
Query: 241 catgagtgtgtcctggatgtatatacgtacaccacacgcatgtctggggcctgcagaagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catgagtgtgtcctggatgtatatacgtacaccacacgcatgtctggggcctgcagaagt 500
Query: 301 cagaaaaggcatctgatcccttggagctggagttatagctggttgtgagctgccaggtat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagaaaaggcatctgatcccttggagctggagttatagctggttgtgagctgccaggtat 560
Query: 361 gtactaggagtagaacttaaatcctctgagaaagcagccagtgctcttaactg---aacc 417
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 561 gtactaggagtagaacttagatcctctgagaaagcagccagtgctcttaactgctgaacc 620
Query: 418 agccatctctctgtctctctagcccttgtatgtttctttttcttgctt-atttttaaaag 476
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 621 agccatctctctgtctctctagcccttgtatgtttctttttcttgctttatttttaaaag 680
Query: 477 tattttatttaatatatata--catatgta--cacacacactttgtatatatatatata 531
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 681 tattttatttaatatatatatacatatgtatacacacacactttgtatatatatatata 739
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 108
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space: 590436
Effective search space used: 590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no236_g04.g1 MSMg01no236_g04.g1 CHROMAT_FILE:
MSMg01no236_g04.g1 PHD_FILE: MSMg01no236_g04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:56 2005
(662 letters)
>mm_chr7_138758112_138759173
Length = 1062
Score = 882 bits (456), Expect = 0.0
Identities = 492/504 (97%), Gaps = 2/504 (0%)
Strand = Plus / Minus
Query: 1 actgggcagaaactgagagaccaactgaaaagcagaagaaaatttcccatctc-aaaggg 59
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 912 actgggcagaaactgagagaccaactgaaaagcagaagaaaatttcccatctcaaaaggg 853
Query: 60 agcatgtagagccccaaacattcacgcccctcaaggggtgtaaccatgacatactacaat 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 -gcatgtagagccccaaacattcacgcccctcaaggggtgtaaccatgacatactacaat 794
Query: 120 taaaatgatgaagtcacagagcaaagaatacatactgaaagccatgaggaaaagcgccaa 179
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 793 taaaatgatgaggtcacagaacaaagaatacatactgaaagccatgaggaaaagcgccaa 734
Query: 180 attacttacaaaggcaaactcatatcagaagccctaaaagttcagaaaaccctggagttg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 attacttacaaaggcaaactcatatcagaagccctaaaagttcagaaaaccctggagttg 674
Query: 240 atatacctcaagccctgaatgtaaataagtgctaaccaagattgttgtgcccggcaacgt 299
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 673 atatacctcaagccctgaatgtaagtaagtgctaaccaagattgttgtgcccggcaacat 614
Query: 300 tatcttttgaaattgatgaagaaacaaagatgttctaagattagtgcaccaaagcaatcc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 tatcttttgaaattgatgaagaaacaaagatgttctaagattagtgcaccaaagcaatcc 554
Query: 360 ctggcttctacgctaacacaggggacgaaggctgtcaccaacagcagcactcagggaaga 419
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 553 ctggcttctacgctaacacaggggacgaaggctgtcgcaaacagcagcactcagggaaga 494
Query: 420 ataaatttcaagatcaggacaaacaaacagatgagattcggaaagccatcacccatgagc 479
|||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||
Sbjct: 493 ataaatttcaagatcaggacaaactaacagatgagattaggaaagcaatcacccatgagc 434
Query: 480 aactcaataaaatcgccaactccc 503
|||||| |||||||||||||||||
Sbjct: 433 aactcagtaaaatcgccaactccc 410
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space: 685904
Effective search space used: 685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
