BAC Information

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BAC

Clone NameMSMg01-236G22
Chromosome7 (Build37)
Map Location 69,173,849 - 69,174,034
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC625287, D0Kist2, LOC100041248, LOC100041259, EG664943, B230209E15Rik, EG620934, LOC100041293
Downstream geneNdn, Magel2, Mkrn3, Peg12, Atp5l-ps1, EG665038, LOC669222, LOC384631, LOC622243, EG622251
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236G22.T7 (MSMg01no236_g22.b1)MSMg01-236G22.TJ (MSMg01no236_g22.g1)
ACCAG401690AG401691
length760747
length of high quality
(start - end)
627 (46 - 672)186 (134 - 319)
definitionCHROMAT_FILE: MSMg01no236_g22.b1 PHD_FILE: MSMg01no236_g22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:00 2005CHROMAT_FILE: MSMg01no236_g22.g1 PHD_FILE: MSMg01no236_g22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGGCCCATACCCAAACATGATAAAAGCAATCTACAGCAAACCAG
GAGCCAACATCAAAGTAAATGGAGAGCCGCTAGAAGCAATCCCACTAAAA
TCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGT
ACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGA
TACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATG
ATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCT
GATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGT
CAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGG
GAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATATCTTGGCGT
GACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAATCTC
TGAAGAAAGAAATTAAGGAAGATCTCAGAAGATGGAAAGATCTCCCATGC
TCATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGC
AATCTACAGATTCAATGCAATCCAAATCAAAATTCCAACTAAATTCTTCA
ACGAATTGGAAGGAGCAATTTGCAAATTTGTCTGGAATAACAAAATACCT
AGGATAGCAA
CGATGCAGTGGGAGGCCTGGGGGCCGCCTGGCTTTCCCACCGCGGNGAAC
NANAGAAGGATTTGCGACAGAAGGAGCAGGAGAAAAGNCAACTGAGAANG
AGAAACACGGGNCTTTTAGCCCATGAGGAGAGTGAATTTCTTCACTTAGA
TATCTCAGAGGAGGAGGTATTTATGACTCAGAATTATTCAACTGATGGAT
TGATAGCAACAGTTTTAAAAGGTGAGTGGATGATTACAGGGAGATACATG
TATTTTTAATAATGAGATAAACATGAATAACAGTATGATTCAAATTATGG
AGAAGAGGGATATATCCTTTTTTTTTTCAGAGAGAGCCAAGCAGAAGACG
CAGCAATTATTTTGTCTCCCCCCCGCCCCTGGCCTTGGATTCGTAGTAAA
ACTGCGTGGAAGTAATAGGACAGAAACAAGACATCAATTTGGTGAGAGTG
TATATTCTTGCATGCTATGAGTATCTGTAACACATGAAAAGGGAAACTGC
TAGCCATACTATTATAATTTTTATTGAGGATATAATTAAGAAAACTTTTA
AGGCAGTTTTATCTTTATTGAAGTAAGGCAGGAAAATCATTTAATTTTTT
TTTGAACAGGCTTTTTCAGAGGATTTAGCAAGAGTAATGATTTGTGTCAT
TGTGGTTGATGTTTTTATGTAAGGACATTGCTTTTTATTAAAGACGGTGA
GACTTGTGCCATTGACCAGCATAAGCTCAGAATCATCCATTGGCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_g22.g1 MSMg01no236_g22.g1 CHROMAT_FILE:
MSMg01no236_g22.g1 PHD_FILE: MSMg01no236_g22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:00 2005
         (186 letters)



>mm_chr7_69173649_69174234
          Length = 586

 Score =  329 bits (170), Expect = 7e-95
 Identities = 182/190 (95%), Gaps = 8/190 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaatttcttcacttagatatctcagaggaggaggtatttatgactcagaattattcaact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gaatttcttcacttagatatctcagaggaggaggtatttatgactcagaattattcaact 327

                                                                       
Query: 61  gatggattgatagcaacagttttaaaaggtgagtggatgattacagggagatacatgt-- 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 326 gatggattgatagcaacagttttaaaaggtgagtggatgattacagggagatacatgtac 267

                                                                       
Query: 119 --atttttaataatgagataaacatgaataacagtatgattcaaattatggagaagaggg 176
             |    |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aaa----taataatgagataaacatgaataacagtatgattcaaattatggagaagaggg 211

                     
Query: 177 atatatcctt 186
           ||||||||||
Sbjct: 210 atatatcctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 186
Length of database: 586
Length adjustment: 8
Effective length of query: 178
Effective length of database: 578
Effective search space:   102884
Effective search space used:   102884
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)