BAC Information

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BAC

Clone NameMSMg01-236H10
Chromosome7 (Build37)
Map Location 29,516,816 - 29,516,955
singlet/doubletsinglet
Overlap geneFbxo17
Upstream geneZfp60, LOC100043229, LOC100043233, 4933426I21Rik, Zfp59, 4732475C15Rik, Prkcz2, 1700049G17Rik, EG668175, LOC100043771, Zfp780b, C130069I09Rik, LOC100043772, Psmc4, LOC100043774, 9530053A07Rik, Fbl, Dyrk1b, Eid2, LOC434156, BC089491, Dll3, Timm50, Supt5h, Rps16, Plekhg2, Zfp36, Ixl, Paf1, Samd4b, 1700085B13Rik, Gmfg, Lrfn1, LOC624672, 1700028B04Rik, EG330496, Il28, Sycn, 1190020J12Rik, Pak4, C330005M16Rik, Fbxo27
Downstream geneMrps12, Sars2, EG624918, Nfkbib, Sirt2, 5830482F20Rik, Hnrpl, Ech1, Lgals4, Lgals7, Capn12, Actn4, Eif3s12, Map4k1, Ryr1, Rasgrp4, 1110006G06Rik, Spred3, Ggn, Psmd8, A230107C01Rik, Kcnk6, Yif1b, Spint2, Ppp1r14a, Neud4, Sipa1l3, LOC100043791, 4932431P20Rik, 4930432E11Rik, 1700067C01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236H10.T7 (MSMg01no236_h10.b1)MSMg01-236H10.TJ (MSMg01no236_h10.g1)
ACCAG401709AG401710
length791814
length of high quality
(start - end)
44 (46 - 89)144 (127 - 270)
definitionCHROMAT_FILE: MSMg01no236_h10.b1 PHD_FILE: MSMg01no236_h10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:02 2005CHROMAT_FILE: MSMg01no236_h10.g1 PHD_FILE: MSMg01no236_h10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTATTTCCAGAGGATCCGCGGAATTCTAGGACTTTCCACTACCTAGTAA
GACCGTGCCTCAAGAAAACAACGCAAAAAGTGAAGACAGGCTGAACGGCT
CAGCAAGTATATGAGAGTTACCAAGCTTGCAGACCTGGGTTTAATTCCCT
GGAACTACTATGTAAAAAGAGAGAACTAAGCCGGGCTTGGTGCCCCTTAC
CTTTAATCCCACCTCTCTGTTTCCCTCCCCCCCTTTTTTTCCCATTCCCA
TTTTTTCCTGCCCCACCACTTATTTTCATCACCCATTTTTTTTTTTTCTT
ACCCCCTGTTTTTCCCTCTCCCCCCCCTTTTTTTTTTTTTTCCCCCCCCC
CCCCCCCCCCCTTTTTTTTGCCTTCCCCCCACATACCCCCTCCCCCTATA
AAAAAAATTCATCCCCACCCCATTTACTCCCCCCCCCCCCCCTTTTTTTA
TTTTCACTTATCCCCACTAACTCAAACATATCTTTTTTAATTTAATTTTT
TTCCCCACAAACTCAATTCTCTTTAACCCTTTTTACACCTCTATTTAATT
TTCTCATCCCCCCCACCTCCATACCCCCCCTATTTAACTATTATTTTTTA
TACCCTCAACTTTCCTCCCCCACTCACTCCCATTACTTTTTTCTCCCCCC
CTCTACTTCCCTCTTTTTTTCTCTTCCCTTTCTTTCTCCGCCCTTTTTTT
TTTATATCTTCCTTTTTTTCTCCCCCTTATTCCCTTTCTCCCCCCCCTTC
TTTTTTCTTCCTTCTTCTTTTCCTTTCTTCTCCCCCTTTTT
CCCCTTTTTTTTTTTTCCTTTCTTATCTAACTTCCCTATCCTANNNCNCC
ACTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAACAACACTAGGTATGCAAGACT
TTAAATGGTCAGCCATGGAGATGACCCTAGGTACAGAAAGAGTGAGAGGC
AGCAGGAAGGGTGCAGGAACATAGGATTGGAGACCAAAGGGTGTGGGTCT
CCAAGACCCTGGAGAATATGACAGAGTATAGGAAATGATGGGCCTTGGGT
GAGAATATGGTGGGTAGTAGACTCACTGCCCTCCAATGCCCTCCAGCTGA
GATCTTTAGATGGGGGCCTGGTGTTTTTTTGAGACGGAATAGTCTGGGTG
TGGCTCGGAGGATTTTTTTTTCCCCGCCCCGCAAGGATCATAAGCAGAGA
CTTGGATTCTAGATACCTCCACGAAGAAAGAAAGAGATATATAGTGAATT
CCAAGGTCCAAGTGGGTGACACAAGTCTGGGCAGAAATGGTTTTCCCTCA
TTGACCCTTGTTGTTGTTGTCCTACTTTTTTTTACACCGATCTATTCATT
AAATATAAGAAAAATTATCTGTACTCTGTATTCATAACCCTCCCAAAAAA
GTAGATAAAATCTTTTTATGTAATGATCGGGGAACCACACAGACGATTGC
CAGCAATTTTGTTTTTTCTGTATCTTCTGTCACCAGCATATCTTTTGGCG
CCTAAAAATAATGGCAAATAACACCAACCATAAATAATTTATAATATATT
TCCACTCCCCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_h10.g1 MSMg01no236_h10.g1 CHROMAT_FILE:
MSMg01no236_h10.g1 PHD_FILE: MSMg01no236_h10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:02 2005
         (144 letters)



>mm_chr7_29516616_29517159
          Length = 544

 Score =  255 bits (132), Expect = 7e-73
 Identities = 138/140 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaacaacactaggtatgcaagactttaaatggtcagccatggagatgaccctaggtacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 201 aaacaacactaggtatgcaagactttaaatggtcagccatggagatgaagctaggtacag 260

                                                                       
Query: 61  aaagagtgagaggcagcaggaagggtgcaggaacataggattggagaccaaagggtgtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagagtgagaggcagcaggaagggtgcaggaacataggattggagaccaaagggtgtgg 320

                               
Query: 121 gtctccaagaccctggagaa 140
           ||||||||||||||||||||
Sbjct: 321 gtctccaagaccctggagaa 340


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 144
Length of database: 544
Length adjustment: 8
Effective length of query: 136
Effective length of database: 536
Effective search space:    72896
Effective search space used:    72896
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)