BAC Information

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BAC

Clone NameMSMg01-237B07
Chromosome7 (Build37)
Map Location 95,440,264 - 95,440,379
singlet/doubletsinglet
Overlap geneCtsc
Upstream geneNox4, Tyr, Grm5
Downstream geneLOC100039756, Rab38, LOC100039924, LOC666598, EG621562, Tmem135, LOC100039969
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237B07.T7 (MSMg01no237_b07.b1)MSMg01-237B07.TJ (MSMg01no237_b07.g1)
ACCAG402140AG402141
length794775
length of high quality
(start - end)
232 (138 - 369)139 (377 - 515)
definitionCHROMAT_FILE: MSMg01no237_b07.b1 PHD_FILE: MSMg01no237_b07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:48 2005CHROMAT_FILE: MSMg01no237_b07.g1 PHD_FILE: MSMg01no237_b07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTCTCATCCCNNNCTTTTTTTTCCTTCCAGGACCCCCTTTTCATTTTTT
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAAAAATGCGC
GGAATTCTCAGCTGTTTCATACAAAATGGNTGAGTAGCCCCTGAAAAAAA
GTTCAACATCCTTAATCATCACACAAATGCAAATCAAAACAAACCTGAGA
TTACACCTCACACCAGTCAGAGTGGCTAAGATCAAAAATTCAGGTGACAG
CAGATGCTGGCAAGGATGTGGAGAAAGAGGAATATTCCTCCATTGTTGTT
GGTGGGATTGTAAGCTGGTATAACCACTCTGGAAATCAGTCTGGCGGTTC
CTCAGAAAATTGGACATATTTACTACCATAAGATCCAACAATATCTCTTC
AGGGCATATACCCAGAAGATGTTCCAACTTGCAATAAGGACACATGCTCC
ACTAAGCTCATAGCAGCCTCATTTACAATAGCCAGAAGCTGGAAAGCACC
CAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGCTACATTTACA
CTATGGTATTCACTACTCAGCTATTAAAAACAATGAATTTATGAAATTCT
TAAGCAAGTGTATGGATCTGGTAGATATCGTCCTGAATGAGGTAACCCAA
CTACAAAAAAACACACTTGATATGCACCCTATTGATAAATATGATATTAA
TCCCATCAATCATTCCCAATTAAATCCGTTTTAAACTCCATTCTCTCAAA
GCCCTTCTTATATGCTGAATGCAAACCCTCAAAAAGCATCTTAN
TTTTTTTTTTCTNTTTTTTTTTTCCTTCTTACCTCCTTATATTTTTTCTT
CGTAGCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTAATCAAATGCAAAGCTGCCAGAAGT
TGAAACCAAATGATGATACATTTCACATAGAAAATATTAACATTTAGATT
CAAATACAAGAACGGAAGATATAAAATTTGATTCTTATCTATGCTTGAAG
ACACTTGGTTTAAGCTAAAACATACATTCCAAAAATAGCTAAAAACCAAA
CTACTACCACTCAGCAAAGTGGTCAGCATTCTTGGGCTCATTCTCAGGTC
CTGGTTCACAAAGTCTCAATCATGAGGTTGGAAGAAAACCTGAAAATCCA
CTCAACTGTTAATTAGCTCCAATTAATTCTTATGCTTAGAGGCTGTGGAA
CATAAACTATTCTCTTCAGGCTACTAAACACACACACACACACACACACA
CACACACACACACACAAACAACAACAACAACTACAACCACAAAACCCAAC
AGACCCAGGAAACATTACTGACATAAAATTCTATATTTTCCTCAGGCACT
AATAACCCCCAAAGCTAGAACTTTACTACTGTACTATTGAAAGTTTACGC
TTTTTTTTTTTTTTTGGCTTTTATAAGTGAATAACTTTACCGCCTCATGA
ACACATACCCTCCCAAAACGAGTCTGTTCTCTTTTGCATTATATTATTTT
AAATAATGCTTCTAGAGGCCCGGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_b07.g1 MSMg01no237_b07.g1 CHROMAT_FILE:
MSMg01no237_b07.g1 PHD_FILE: MSMg01no237_b07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:48 2005
         (139 letters)



>mm_chr7_95440079_95440617
          Length = 539

 Score =  209 bits (108), Expect = 6e-59
 Identities = 114/116 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttggaagaaaacctgaaaatccactcaactgttaattagctccaattaattcttatgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gttggaagaaaacctgaaaatccactcaactgttaattagctccaattaattcttatgct 242

                                                                   
Query: 61  tagaggctgtggaacataaactattctcttcaggctactaaacacacacacacaca 116
           ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 241 tagcggctgtggaacataaactattctcttcaggctactaaaaacacacacacaca 186


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 139
Length of database: 539
Length adjustment: 8
Effective length of query: 131
Effective length of database: 531
Effective search space:    69561
Effective search space used:    69561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)