BAC Information

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BAC

Clone NameMSMg01-237F14
Chromosome7 (Build37)
Map Location 59,212,837 - 59,213,068
singlet/doubletsinglet
Overlap geneGas2
Upstream geneEG668768, EG638046, EG668770, EG668774, LOC668776, LOC434186, LOC546971, LOC668779, Tmem16e, Slc17a6, EG620599, LOC654473, LOC100040608
Downstream gene1700015G11Rik, EG668783, EG620782, LOC100040692
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237F14.T7 (MSMg01no237_f14.b1)MSMg01-237F14.TJ (MSMg01no237_f14.g1)
ACCAG402321AG402322
length707699
length of high quality
(start - end)
233 (110 - 342)305 (45 - 349)
definitionCHROMAT_FILE: MSMg01no237_f14.b1 PHD_FILE: MSMg01no237_f14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:09 2005CHROMAT_FILE: MSMg01no237_f14.g1 PHD_FILE: MSMg01no237_f14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCTAGATGCTTGCAGGCTACCTAGCCTGCTTAGGCAGCAGCT
TTATATCAAAGAAAATCTGTGCTGAAGAAGGTAGAAGGCAAGGATAGACC
AGTGTGGTTTTTCTGTAACCTCTGTGTCTTCTCTCTGCCATCTGTGCACT
TGTGGTCATATACTAGAACATGTATGCTTATGTACACAAACATTCCATAC
ACATATGGTATTTTCAGAAACAAATTTTTGGTTTTTGTTGTTTTCCGTTA
ATTTTTGCTTGGCATCTATTCTGAAGGTAGAAACCTACTGTCTTCTTTTT
TTAACTGTCCCACCCCATTTCAGAATTAGGGGGTCAGGACAAAAAAAAAT
CTCTTTAACAATTTCTGCAGCAACAGAGATGTTAATATTTCCAGTCAACC
AGACAATGCTTCACTGAAATGCAAACTGAAGGCTCCTGGCTGCTGCCTGC
ATTCCTTCTTGTTCTTTTTTCCTTCCTTCACCTGCTGTCCACTGGGGCCT
CCCATATTGAAAACTCATCTGCACGACTAATCTGTATGAGAATTCCCAAT
CAGGTGACAGGATGCAGTCTTCCTGAGAGTTGGAATGTGTCCCCCAGCGG
AGTCACATTAACATATGGAAACCCAGAATAATGGTAGAATGCAGCTTCTT
TCCCCTC
CTCACTATATCCAGAGGATCCGCGGAATTCCAGGATATCCCGGGTTAAAG
AGTGAGACCTTGTTTCAAATGAACAAACAAAAACAAAATTTTCGTCTCCT
TTTTATTTAAGGACACATGAATGTGCACACACATCTGTGCAGGTGCCTGA
AGAGGCCAGAGGTTGGTATCGGGTCCCCTAGAGCTAGAGTTAGAGATGGC
TGTGTGCTGCCAGGTATAGGTACTGGGAAACAAATGCTAGTCTCCTGTAA
GTGAAGCAAGTGTTCTTAACTGCTTCGCCATGTCTTCAGTCCATATTAAG
CAAGTTTTAAAAAGAACAAAATTGAAGACTTACACTTCTTTTGCACGCTC
CTGTTGCAACAATCAAGAGTGTGTATATCCATATACAAATAAGTTCGCTC
AGCACAACAGACAGTCTAGAGGTAGGCACACATACAATGCCATCATGAGA
TTCTTGGACGTTTGCACGAGTAAAGCATATCTACATGCAAACCTGTTCAC
AAATATTACAAGCAGATCTACACTCTATAACACAATGGATGAGTAGGGAA
TTATTTCAATATGCAGTCAATAAAACTAGAAATAATAACAAGGAAAGGTC
TATGAGAATAACAGATACTGGAGCAATCCCCAAAGTATTTTGTTAAATGC
GGGAACTCTGATATCTAAAACTGTTTTATAATGTTATATTAACAGATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_f14.b1 MSMg01no237_f14.b1 CHROMAT_FILE:
MSMg01no237_f14.b1 PHD_FILE: MSMg01no237_f14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:09 2005
         (233 letters)



>mm_chr7_59212637_59213268
          Length = 632

 Score =  381 bits (197), Expect = e-110
 Identities = 224/233 (96%), Gaps = 1/233 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaaaatctgtgctgaagaaggtagaaggcaaggatagaccagtgtggtttttctgtaac 60
           |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 201 agaaaatctgtgctgaagaaggcagaaggcaaggatagaccagtgtggcttttctgtaac 260

                                                                       
Query: 61  ctctgtgtcttctctctgccatctgtgcacttgtggtcatatactagaacatgtatgctt 120
           |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 261 ctctgtgtcttctctctgccatctgtgcac-tgtggtcatatactagaacatgtgtgctt 319

                                                                       
Query: 121 atgtacacaaacattccatacacatatggtattttcagaaacaaatttttggtttttgtt 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 320 atgtacacaaacattccatacacacatggtattttcagaaacaaatttttggtttttgtt 379

                                                                
Query: 181 gttttccgttaatttttgcttggcatctattctgaaggtagaaacctactgtc 233
           ||||||||||||   | ||||||||||||||||||||||||||||||||||||
Sbjct: 380 gttttccgttaaaaatagcttggcatctattctgaaggtagaaacctactgtc 432


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 632
Length adjustment: 9
Effective length of query: 224
Effective length of database: 623
Effective search space:   139552
Effective search space used:   139552
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)