BAC Information

Click to search

BAC

Clone NameMSMg01-237G06
Chromosome7 (Build37)
Map Location 38,291,461 - 38,291,705
singlet/doubletsinglet
Overlap geneZfp536
Upstream geneTshz3, LOC100043874
Downstream geneLOC100043453, EG627844, C80913, Ccne1, 1600014C10Rik, Plekhf1, Pop4, LOC668519, LOC100043464, 1700010N08Rik, EG627975, EG625594, EG627983
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237G06.T7 (MSMg01no237_g06.b1)MSMg01-237G06.TJ (MSMg01no237_g06.g1)
ACCAG402353AG402354
length665682
length of high quality
(start - end)
316 (5 - 320)247 (105 - 351)
definitionCHROMAT_FILE: MSMg01no237_g06.b1 PHD_FILE: MSMg01no237_g06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:12 2005CHROMAT_FILE: MSMg01no237_g06.g1 PHD_FILE: MSMg01no237_g06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGATCCGCGGAATTCTATCTCACTATGAGCCACAGTGTCTTAGTCACA
GTTACTACTGCTGTGTTGAAACACCATGACCCAAACTGCTTAGAATGGAG
AGGTTGTATTTGGCTCATGCTTCCACACCACTTTTCACCATCAAAGAACA
GGAACTCAAGCGGGGCAGGAACCTGGAGGCAGGAGCTGATGCAGAGGCCA
TGGAGGGGTGCTGCTTACTGGCTTGATCCTCAAGGTTTGTTCAGCCTGCA
TTCTTCTAGAGCCCAGGACCACCAGCCCAAGGACCACCCCACCTACAGTG
CTCTGGGGCCTCTCCCATTTTTCACTGCCCCCCCCCACCCCCGCCCTGAT
CTTACGGAGGCATTTTCTCAGTTGAGGCCCCCCCCTTTCAGATAACTCCA
GCTCCTGTCAAGTTTACTATGACTAGCCAGCACACAAAATAACCCTTAGT
CCTCTGTACCTGGTATAAGAACTAACACAGAGCAGAACAATAAACAAAAC
GCAAGCCAAGAAGTCCTCAGTCCTCCTGCCCGCCCTGTCCGTGGAGGCCG
GTCCATCAAGCTTTAGTTTCTCCCGAGTTACAGCCAACTGTTCCGCGTGG
CCCAAGGCGGCACACTGCGCATGAGCCAATGGTTACTTTAATTGGGACTT
GTCAATCCCCACATG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTCTACCTGGCTGGAGAAACTGGTCAGGGACTCACTCCGGTAAG
GCCCTGGAGCTGCCGGTCATTATGATTAGGGCAGTATGTGGATTAATTTA
TAATTGAGGAAGACCAGGTATGTGTCTATATCAGAGTGAAAAAAATTGTC
AAGAACTACTGGAAATAGGGCCAGCAATATGGCCCAGTGGGTAAAAGTGA
TTGCCACACAAGCCTGGTACCCTGAATTCAATCACAGCTATCCACACAGA
TGTGGAGGGAGAGATTGATTCCACAGACTTGTCCTCTGGATTCTATGTGC
GACCCCTGCTACATGCCAGCCCCACCCCCATTTCCCCCAATAAGAGGATC
TAACAAAGAGCTACCAGAATAAATTCAACCTCTGGCCATTTGTTGCAAGA
GGGACGAGTGGGGCCTAAAGCAAGAATGGCCGTCATGTTGGCTGAGACTC
ACTGCCCACTGAGCAGCCTGGGAACTCGGCCTTCCCAGGAGGGTCATTCA
CAGGACACAAGCCATGTCCACCATGTGTCTGTGAGTCCCAGGATGGCAGA
CAGGGCCTTGGCCCTGAGTCACAGCCAGAGGGCCATAGATCTGTGTGTTC
TGGGAGACTGACAGAGCTGGACTGCCTGTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_g06.g1 MSMg01no237_g06.g1 CHROMAT_FILE:
MSMg01no237_g06.g1 PHD_FILE: MSMg01no237_g06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:12 2005
         (247 letters)



>mm_chr7_38291393_38292039
          Length = 647

 Score =  474 bits (245), Expect = e-138
 Identities = 245/245 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggagctgccggtcattatgattagggcagtatgtggattaatttataattgaggaagac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tggagctgccggtcattatgattagggcagtatgtggattaatttataattgaggaagac 254

                                                                       
Query: 61  caggtatgtgtctatatcagagtgaaaaaaattgtcaagaactactggaaatagggccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 caggtatgtgtctatatcagagtgaaaaaaattgtcaagaactactggaaatagggccag 194

                                                                       
Query: 121 caatatggcccagtgggtaaaagtgattgccacacaagcctggtaccctgaattcaatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 caatatggcccagtgggtaaaagtgattgccacacaagcctggtaccctgaattcaatca 134

                                                                       
Query: 181 cagctatccacacagatgtggagggagagattgattccacagacttgtcctctggattct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 cagctatccacacagatgtggagggagagattgattccacagacttgtcctctggattct 74

                
Query: 241 atgtg 245
           |||||
Sbjct: 73  atgtg 69


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)