BAC Information

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BAC

Clone NameMSMg01-260A15
Chromosome7 (Build37)
Map Location 112,150,568 - 112,151,126
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr638, Olfr639, Olfr640, Olfr641, Olfr642, Olfr643, Olfr644, Olfr645, Olfr646, 4931431F19Rik, Ubqln3, Ubqlnl, E030002O03Rik, Olfr647-ps1, Olfr648, Olfr649, Olfr650-ps1, Trim6, LOC667497, EG667823, Trim12, Trim34, 9230105E10Rik, A530023O14Rik, EG434219, LOC100041595, Trim30, AI451617, LOC672495, LOC625305, EG625321, Olfr651, Olfr652, Olfr653, Olfr654, Olfr655, Olfr656, Olfr657, Olfr658, LOC667882, Olfr659, GA_x5J8B7W3SPQ-80592-80214, Olfr661, LOC625495, Olfr662-ps1, Olfr663, Olfr664, EG625530, LOC100042613, LOC233637, Dub1a, Dub1, Olfr665, Olfr666, Olfr667, Olfr668, Olfr669, EG545987, Olfr670, Olfr671, Olfr672
Downstream geneGA_x5J8B7W6B6J-189947-189022, Olfr674-ps1, Olfr675, Olfr676, Olfr677, LOC667987, Olfr678, Olfr679, Olfr680-ps1, Olfr681, Olfr682-ps1, Olfr683, Olfr684, Olfr685, Olfr686, EG668035, Olfr688, Olfr689, Olfr690, Olfr691, Olfr692, EG545989, 4632419K20Rik, Cnga4, EG244189, Cckbr, Prkcdbp, Smpd1, Apbb1, Hpxn, Trim3, Arfip2, Fxc1, Dnhd1, LOC100042811, LOC672646, 1500003O22Rik, Ilk, Taf10, Tpp1, Dchs1, Mrpl17, 9130208D14Rik, LOC626055, LOC100042856
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-260A15.T7 (MSMg01no260_a15.b1)MSMg01-260A15.TJ (MSMg01no260_a15.g1)
ACCAG402812AG402813
length741751
length of high quality
(start - end)		---559 (80 - 638)
definitionCHROMAT_FILE: MSMg01no260_a15.b1 PHD_FILE: MSMg01no260_a15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:00 2005CHROMAT_FILE: MSMg01no260_a15.g1 PHD_FILE: MSMg01no260_a15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:01 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TATTTGCGCTCTAATCGACTCCTTTGTCCTCGACCGCGGATGNNAGAGAG
TTCCTTANTCTGCTGTATTCTTCTCGTCATGTGCTCTAATCCTTCACAGA
AAACTGCCACTCTGTCTCTGATAATCAGAAAGTGGGTTGAGTCTTCAGNT
CANTTGGTCAGTTCTNATTTCTTCAATCCATTGCCGAGGNNNTGGTTATA
AGANAANTGTTGTCAATGGNACACTCCTCGAACTTCTATTCTTCTGTATT
ACCATGTGCTTTTNNATAAAACGAGATTGGNANCCTCATGAGTGCGAATC
TTTAGTTGTTCTTCGTCTGCCAGAAGGNTATNATCCTAAATAACTTATTA
ACCCCAGAAGTTAGACACAAGCTTTCCTTAGAATCGTTGTGAATAACGGG
GTACAGATGTTCTCTCCTTTCTATCGGAGGCAGTTTGNATTGCCACTTCA
TCCTATCTTAACGGTTCAATGGTTTCTAGTATCACTGTAATGCAAATCAG
CCTGTGTCTGAGATTTCTTCCTGCGCCATGTAGAATGACGAATTATTTCG
AGTCATCACCTAACATCTAGGCTTATTTATTTTTGCTTANATGGCCTTGN
TTCCTAGGNCTGTGCTNATCGCGNTNAGTGGAAAAATCGTCCCTTTNTCC
TTGCGCTGNCCAGGNAGTTGGCTTTCGTCTATCTNGATCTGGACTTAAGA
TTTGCCTGATCGGGGGCTCGTCTTCCCTTGGTAAGCGGCAT

NCCCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAGAAATTCTACTGGTTCTA
ATAAAAGGATATCTATCAACTTGAGAGCGAAGACAGCATGGGAGGTGTTT
GAACAAGGGTAACTGGGGCAAGGAAAGAAAGGAGGGGGTGATGTAATTTT
ATTTCATTGAAAACATATTTTTAAAAGAAAGGTTACTGGTTCACTTAATA
TCTGAAGCTTTAGTGATATTTATTTGCATATTTATAAGTTATTAGTATAA
TCTAAATAAGACTTGGTTTCATGGGGAAAGAAACACAAACATGAAACATA
ACTAAATAAATGCATGGCTTTTAGATTCCAGGTAAGCTGGAGTCCTTAGG
GGTTGACTTAATCATGAGCAACAAGATGTATTGCTTTAAAAATGGCCCAA
TCATGAGAGAATATAACAGACTTAGATAACAAGATAGGGAATTCACACTG
GCTCAGATATTCTTGGGGGATGAGTTGGAACAGAGTAATTAGAAATGAAG
AAGTTAAAAATTATAGAATTATGCAAGTTGGGGAACTAAAAGGAGAAATT
CTGCAGTCTCAAGGGGTCCCTTGCCAGTGTACTTTTTATGTCCATAGGAC
TGTGTGACAATTACACATTGTCTTTGTGATCAGACACCACAAAGACCTAT
GAGAGTGACACTTCTTGGTCACAGAGGACGATTTTAAACTCCAGTATAAT
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no260_a15.g1 MSMg01no260_a15.g1 CHROMAT_FILE:
MSMg01no260_a15.g1 PHD_FILE: MSMg01no260_a15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:01 2005
         (559 letters)



>mm_chr7_112150368_112151326
          Length = 959

 Score = 1035 bits (535), Expect = 0.0
 Identities = 553/559 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttagaaattctactggttctaataaaaggatatctatcaacttgagagcgaagacagcat 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 759 ttagaaattctactggttctaataaaaggatatctatcaacttgagagtgaagacagcat 700

                                                                       
Query: 61  gggaggtgtttgaacaagggtaactggggcaaggaaagaaaggagggggtgatgtaattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 gggaggtgtttgaacaagggtaactggggcaaggaaagaaaggagggggtgatgtaattt 640

                                                                       
Query: 121 tatttcattgaaaacatatttttaaaagaaaggttactggttcacttaatatctgaagct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 tatttcattgaaaacatatttttaaaagaaaggttactggttcacttaatatctgaagct 580

                                                                       
Query: 181 ttagtgatatttatttgcatatttataagttattagtataatctaaataagacttggttt 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 ttagagatatttatttgcatatttataagttattagtataatctaaataagacttggttt 520

                                                                       
Query: 241 catggggaaagaaacacaaacatgaaacataactaaataaatgcatggcttttagattcc 300
           |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 519 catggggaaagaaacacaaacatgaagcataactgaataaatgcatggcttttagattcc 460

                                                                       
Query: 301 aggtaagctggagtccttaggggttgacttaatcatgagcaacaagatgtattgctttaa 360
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 459 aggtaagctggagtccttaggggttgacttaatcatgagcaagaagatgtattgctttaa 400

                                                                       
Query: 361 aaatggcccaatcatgagagaatataacagacttagataacaagatagggaattcacact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 aaatggcccaatcatgagagaatataacagacttagataacaagatagggaattcacact 340

                                                                       
Query: 421 ggctcagatattcttgggggatgagttggaacagagtaattagaaatgaagaagttaaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ggctcagatattcttgggggatgagttggaacagagtaattagaaatgaagaagttaaaa 280

                                                                       
Query: 481 attatagaattatgcaagttggggaactaaaaggagaaattctgcagtctcaaggggtcc 540
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 279 attatagaattatgcaagttggggaactaaagggagaaattctgcagtctcaaggggtcc 220

                              
Query: 541 cttgccagtgtacttttta 559
           |||||||||||||||||||
Sbjct: 219 cttgccagtgtacttttta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space:   521001
Effective search space used:   521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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