Query= MSMg01no260_m03.b1 MSMg01no260_m03.b1 CHROMAT_FILE:
MSMg01no260_m03.b1 PHD_FILE: MSMg01no260_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:57 2005
(517 letters)
>mm_chr7_87640572_87641488
Length = 917
Score = 920 bits (476), Expect = 0.0
Identities = 503/518 (97%), Gaps = 11/518 (2%)
Strand = Plus / Plus
Query: 5 gaattcattaatgtatctaaaaattatcaccaagttcttcaaatatatgtatttgagtgc 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattaatgtatataaaaattatcaccaagttcttcaaatatatgtatttgagtgc 264
Query: 65 cttgcaatattacactgaagagagtgagataaatacgaaccttctctggagtaacataca 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gttgcaatattacactgaagagagtgagataaatacgaaccttctctggagtaacataca 324
Query: 125 aaagcttgatgattgggtcttttttggataattggaggtaaatatttgcagcttctgagt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaagcttgatgattgggtcttttttggataattggaggtaaatatttgcagcttctgagt 384
Query: 185 cagtcttatcccctgtcagatatgtagctggaatctaagttaagagtaataatttaaatt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagtcttatcccctgtcagatatgtagctggaatctaagttaagagtaataatttaaatt 444
Query: 245 tcattttatttatacattaatcagatatgatcatgcttaggtttcatattttataagtca 304
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 445 tcattttatttatacattaatcagatatgatcgtgcttaggtttcatattttataagtca 504
Query: 305 tatatcacactttccaaaagaaacaaatacctcaccataacaatcaatgcaccattttta 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tatatcacactttccaaaagaaacaaatacctcaccataacaatcaatgcaccattttta 564
Query: 365 tttttaaccccccgtttt-----ctgagtcaagagtttcacttttgagtctcaaacttgt 419
||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 565 tttttaa------gttttgttttctgagtcaagagtttcacttttgagtctcaaacttgt 618
Query: 420 gaccctcctgtaccctcagcttctgaagtactggtaattataggcatgtgtcacatctag 479
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 619 gaccctcctgtaccctcagcttctaaagtactggtaattataggcatgtgtcacatctag 678
Query: 480 ctagtacacatatttttaaaaattaacattaaatgcaa 517
||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ctagtacacatatttttaaaaattaacattaaatgcaa 716
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space: 459849
Effective search space used: 459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no260_m03.g1 MSMg01no260_m03.g1 CHROMAT_FILE:
MSMg01no260_m03.g1 PHD_FILE: MSMg01no260_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:57 2005
(240 letters)
>mm_chr7_87802927_87803566
Length = 640
Score = 441 bits (228), Expect = e-128
Identities = 237/240 (98%)
Strand = Plus / Minus
Query: 1 tttgaatagtagagatctgtgctgtcttacaaatagtctttctcatactccctcactgtt 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 440 tttgaatagtagagatctgtgctgttttacaaatagtctttctcatactccctcactgtt 381
Query: 61 taatgatgtttttgttaatatcttttcttcatgttgttaaaggtccagtgttggttgata 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 380 taatgatgtttttgttaatatcttctcttcatgttgttaaaggtccagtgttggttgata 321
Query: 121 ctcaagtcaatgagaatacagattcattcactcagcaaatatttccttaaagccggacca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 320 ctcaagtcaatgagaatacagattcattcactcagcaaatatttccttaaagccggatca 261
Query: 181 tttgggggtgcctattcagctaggacagccctaaaccctgactttcagtctgtgccactg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tttgggggtgcctattcagctaggacagccctaaaccctgactttcagtctgtgccactg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space: 145761
Effective search space used: 145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
