BAC Information

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BAC

Clone NameMSMg01-261I11
Chromosome7 (Build37)
Map Location 123,742,291 - 123,884,002
singlet/doubletdoublet
Overlap genenone
Upstream geneSox6, LOC100042779, 1110006G14Rik, EG668479, LOC100043313, 1110004F10Rik, Plekha7, Rps13, Pik3c2a, LOC100042798, Nucb2, LOC100043320, EG668484, LOC668485
Downstream geneLOC546993, LOC100043330, Xylt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-261I11.T7 (MSMg01no261_i11.b1)MSMg01-261I11.TJ (MSMg01no261_i11.g1)
ACCAG403890AG403891
length764722
length of high quality
(start - end)		580 (41 - 620)556 (78 - 633)
definitionCHROMAT_FILE: MSMg01no261_i11.b1 PHD_FILE: MSMg01no261_i11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:56 2005CHROMAT_FILE: MSMg01no261_i11.g1 PHD_FILE: MSMg01no261_i11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,883,427 - 123,884,002)(123,742,291 - 123,742,846)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ATCTGGTTGGTCTCTCCAACTTCTTTTTCTCATTAGACTTGTCACTTTCT
TCAGCTTTGTTTCCTGGTGAGAATCAGGGACACAGCCCAGATTGGGTCAA
CCCAAGGACGGCATAGCTACCACACTCATCCTGTGATCCTGGCATGGAGC
AGACACTCAATAAATAACTGCAGAATTGAAAATTGCCCAAGAAACTATGT
ACTGGGGCTTAAAGCACAGCAAGTTGGCTAAATAAAAGAAATCTTCCCCA
AAGGTCTTATTGTGGGATGGGCTAAGATGGGATCTACAATCTAAATCCAA
ACCCATGCAGAAAATGAAAATATACACTGAAAAAGAAAAAGTCAAGACCT
GGAATGACAACTGGAGGTACACTAGAGGGAACCTAGTACACAGTCAAAGT
TGGTGGGTGGGATAGGGGAGGCAAGATGCAAACAGCTAAGGACCAAAATA
GCAGCTGCTCACCAGGCAACTACAAATCAAATGGCTACTGTGAGCCAGTC
ACTGTGCTAAGTGCAGTGAACAGAGAGATATGCAAGTCATGATTCCAACC
CTCCATTGCCCATGCTCCTGTGGGGAATTATAGGCATGAACACAATCACA
GCAGAGTCAATGATAAGGTCGAGTAAACCAAAGGATTCCTAGAGTAGATA
GGAAAAGGAGGATTATTGAAACAAAGGATATGTATTCCTGGCGTTCAAAG
GCTCTTGGTGCTCN

NNNCCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGCCTGAAAACAAGCTCAACATA
AGATGGAGTCTGAATACAAAATGGAGTTTGTAATGTTAGGCTGGGCCCAT
CACAAAGCATAAAGCAAGGATAACAACAGGGACAAGGATAGCTACAATTG
GGGTCATAAGAGATTCACCAGCTAGACCAAAGACATTTCTTTTAACAAAT
AGGAGGCCTCTTTTTAGAGTAGCTTGTACCTACTCAACCTCATGCCACTA
CGTCCTTGGGCTCTTGTGACTTTTCTTCCTGCCCATGGGAACTGTGTACA
ATTATTGCTGGTGATCTGGTAAATGGAAAGAGATTCCCAGCCCTGTTTTT
TTCTGCCTGGTTTTCCCCATGCTGCCTAAATGCCTTGTCTGTAAATTGCA
ACCAGGATAGGTTGGGACCAGAGACTACAGCACACACACTTGTTCCTGTC
AATGGCTGCTTCTAGCCAAGCCACTTAACCAAACCACTCCTGAGATGGGC
AGAGCATTTTTTTGTGAATTTGATTCCAAATTCTAACTAGAGTCCAATTC
CATGGCTCTGGCTTTCATCCTGTCCACATGGACCTGTGTGCCCCTCCCTC
CTCCTGCCTCCATGTACTTGGCCTGCAGATACTCACTCTTCCTTTACGGA
GATTCTCATTGCTACAGACCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no261_i11.b1 MSMg01no261_i11.b1 CHROMAT_FILE:
MSMg01no261_i11.b1 PHD_FILE: MSMg01no261_i11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:56 2005
         (580 letters)



>mm_chr7_123883318_123884297
          Length = 980

 Score = 1098 bits (568), Expect = 0.0
 Identities = 574/576 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatctggttggtctctccaacttctttttctcattagacttgtcactttcttcag 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gaattcatctggttggtgtctccaacttctttttctcattagacttgtcactttcttcag 626

                                                                       
Query: 65  ctttgtttcctggtgagaatcagggacacagcccagattgggtcaacccaaggacggcat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctttgtttcctggtgagaatcagggacacagcccagattgggtcaacccaaggacggcat 566

                                                                       
Query: 125 agctaccacactcatcctgtgatcctggcatggagcagacactcaataaataactgcaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agctaccacactcatcctgtgatcctggcatggagcagacactcaataaataactgcaga 506

                                                                       
Query: 185 attgaaaattgcccaagaaactatgtactggggcttaaagcacagcaagttggctaaata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 attgaaaattgcccaagaaactatgtactggggcttaaagcacagcaagttggctaaata 446

                                                                       
Query: 245 aaagaaatcttccccaaaggtcttattgtgggatgggctaagatgggatctacaatctaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaagaaatcttccccaaaggtcttattgtgggatgggctaagatgggatctacaatctaa 386

                                                                       
Query: 305 atccaaacccatgcagaaaatgaaaatatacactgaaaaagaaaaagtcaagacctggaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atccaaacccatgcagaaaatgaaaatatacactgaaaaagaaaaagtcaagacctggaa 326

                                                                       
Query: 365 tgacaactggaggtacactagagggaacctagtacacagtcaaagttggtgggtgggata 424
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgacaactgggggtacactagagggaacctagtacacagtcaaagttggtgggtgggata 266

                                                                       
Query: 425 ggggaggcaagatgcaaacagctaaggaccaaaatagcagctgctcaccaggcaactaca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggggaggcaagatgcaaacagctaaggaccaaaatagcagctgctcaccaggcaactaca 206

                                                                       
Query: 485 aatcaaatggctactgtgagccagtcactgtgctaagtgcagtgaacagagagatatgca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 aatcaaatggctactgtgagccagtcactgtgctaagtgcagtgaacagagagatatgca 146

                                               
Query: 545 agtcatgattccaaccctccattgcccatgctcctg 580
           ||||||||||||||||||||||||||||||||||||
Sbjct: 145 agtcatgattccaaccctccattgcccatgctcctg 110


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space:   552900
Effective search space used:   552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no261_i11.g1 MSMg01no261_i11.g1 CHROMAT_FILE:
MSMg01no261_i11.g1 PHD_FILE: MSMg01no261_i11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:56 2005
         (556 letters)



>mm_chr7_123742091_123743046
          Length = 956

 Score =  990 bits (512), Expect = 0.0
 Identities = 545/556 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcctgaaaacaagctcaacataagatggagtctgaatacaaaatggagtttgtaatgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcctgaaaacaagctcaacataagatggagtctgaatacaaaatggagtttgtaatgtt 260

                                                                       
Query: 61  aggctgggcccatcacaaagcataaagcaaggataacaacagggacaaggatagctacaa 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggctgggcccatcacaaaacataaagcaaggataacaacagggacaaggatagctacaa 320

                                                                       
Query: 121 ttggggtcataagagattcaccagctagaccaaagacatttcttttaacaaataggaggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttggggtcataagagattcaccagctagaccaaagacatttcttttaacaaataggaggc 380

                                                                       
Query: 181 ctctttttagagtagcttgtacctactcaacctcatgccactacgtccttgggctcttgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctctttttagagtagcttgtacctactcaacctcatgccactacgtccttgggctcttgt 440

                                                                       
Query: 241 gacttttcttcctgcccatgggaactgtgtacaattattgctggtgatctggtaaatgga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gacttttcttcctgcccatgggaactgtgtacaattattgctggtgatctggtaaatgga 500

                                                                       
Query: 301 aagagattcccagccctgtttttttctgcctggttttccccatgctgcctaaatgccttg 360
           |||| ||||||||||||| ||||||||||||||| ||||||| ||||  |||||||||||
Sbjct: 501 aagaaattcccagccctgcttttttctgcctggtcttccccacgctgtttaaatgccttg 560

                                                                       
Query: 361 tctgtaaattgcaaccaggataggttgggaccagagactacagcacacacacttgttcct 420
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctgtaagttgcaaccaggataggttgggaccagagactacagcacacacacttgttcct 620

                                                                       
Query: 421 gtcaatggctgcttctagccaagccacttaaccaaaccactcctgagatgggcagagcat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtcaatggctgcttctagccaagccacttaaccaaaccactcctgagatgggcagagcat 680

                                                                       
Query: 481 ttttttgtgaatttgattccaaattctaactagagtccaattccatggctctggctttca 540
           |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 681 ttttctgtgaatttgattccaaattctaactagagtccgattccatggctctggctttca 740

                           
Query: 541 tcctgtccacatggac 556
            |||||||||||||||
Sbjct: 741 gcctgtccacatggac 756


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space:   516516
Effective search space used:   516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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