BAC Information

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BAC

Clone NameMSMg01-261I15
Chromosome7 (Build37)
Map Location 120,299,963 - 120,300,456
singlet/doubletsinglet
Overlap genenone
Upstream geneDkk3, Mical2, Micalcl, Parva, LOC627808, Tead1, 4632411J06Rik, LOC434227
Downstream geneArntl, A630005I04Rik, Btbd10, Pth, LOC100042736, Mlstd2, EG434228, Spon1, Rras2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-261I15.T7 (MSMg01no261_i15.b1)MSMg01-261I15.TJ (MSMg01no261_i15.g1)
ACCAG403897AG403898
length754731
length of high quality
(start - end)
603 (43 - 645)490 (76 - 565)
definitionCHROMAT_FILE: MSMg01no261_i15.b1 PHD_FILE: MSMg01no261_i15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:57 2005CHROMAT_FILE: MSMg01no261_i15.g1 PHD_FILE: MSMg01no261_i15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTCGGAATGGCTGCTGTTCTGAGGATGTGATCCACAGATGTGTCCTAC
CTGCACAGGGGCGCATGCCTTAAACAGGTGCCTAGAAGTCTTCCAAGTTG
TCATGAAGGCTCAGGTCATGATCCTTGTTTCTTGGGCGAGGCTAGGAGAA
AGTAGGGGTGGGTCCCAGAGCTGCGTTATCAGTGTGCTAATCACATCTGT
CAGATCTCACAGAGCCAGTGTACCTAGGGTCAACCAACAATTTGTGTCTC
CGGGTCTGAAGACTTCCCCCTCCACCCCAGAACTGCGGCAGTGAGAAATT
GCTGGGAGATGAAGGCTCTTGGGAGCAGCCGCCAATTGTTCAATTCAATC
AATGGTTCTCAGTAACTGGAGCATAAACATCCTGGCTCTCTGGCCCTTTG
GGTAGGATAATTATGAGGCATAAACTTCATATTCTTTCCCAGGGGACCAT
GCTTGAGTTGCCCACTAAGGAAGCTGGCTCACTGCATGCCCCTGCTGGGC
CGCATCCCTCTGCTCTGGGAACTTCCTGTTCTCCCAGGATTAGTCCCTAT
GCCTCCCCCAAATATTTATTGTATTTGAACCCTTGTCTCAAGATCTGTTC
CTGTGAGAACATGTATGATGACATACTACACCAAGATAAGAACCCAAGGC
CGGTCATCATGAAGTCCTGCTTTGAATTAAGTTCTGCCAGACACATGTCT
CATG
CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTAATTTACAACAGTGAATAAAAAT
TCCTGCAAAGAAACTGTTTGACTGAACAAAAGCTCCTGGAAGGCGTCGGT
ATCTATAGAGACTGATGGACAGATTGGAATTTTACTACTATGAAGAGACG
AATTTTGTAGGTTCAGAGGTTAATTGATTACTTTATCTTGGGCTACTTTT
AGCTTCTGGAACAGCCATTTCCCTCCCAACTCTGAATCTGAACTAACTCC
TCATGTTTATATATATATGTTATTTATTTATTTATATAATAAATAAAAAC
ATTTTAGACACTTAAGTTAGCAGAACACCAGCTTCCCCCAATCCAAGAAG
TCAGCAGAGAACATCTTGGGCCTACAGAAAGGCTTCTCCCATCTTGATGT
TTCTTCCTCTCTGGTGTACCCACCAACATACTTTAAATTTGCTTTGATTT
ATGGCTTTCTTTGTTTCGTAAAACTAGAACAACTTCATGAAACTGCTTCC
ATGATGGGACATGGAATTTGGGGTAACCTAAATCTGTGTTCCCTGGGCCA
TGGTCTCTTATAATGGCTCCTGAATATACTATCTCTTACTCCCTTTTATA
TGAGAATTTTCGCGTTGGTATATCCCTCCCTCATAGATCTTTGCCTCTTG
ACCCGGATCTTTTGGAAGGGCCCGGGCTAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no261_i15.b1 MSMg01no261_i15.b1 CHROMAT_FILE:
MSMg01no261_i15.b1 PHD_FILE: MSMg01no261_i15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:57 2005
         (603 letters)



>mm_chr7_120299963_120300965
          Length = 1003

 Score =  924 bits (478), Expect = 0.0
 Identities = 490/494 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctcggaatggctgctgttctgaggatgtgatccacagatgtgtcctacctgcac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 gaattcctcggaatggctgctgttctgaggatgtgatccacagatgtgtcctacctgcac 435

                                                                       
Query: 65  aggggcgcatgccttaaacaggtgcctagaagtcttccaagttgtcatgaaggctcaggt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 aggggcgcatgccttaaacaggtgcctagaagtcttccaagttgtcatgaaggctcaggt 375

                                                                       
Query: 125 catgatccttgtttcttgggcgaggctaggagaaagtaggggtgggtcccagagctgcgt 184
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| 
Sbjct: 374 catgatccttgtttcttgggcgaggctaggagaaagtagaggtgggtcccagagctgcgc 315

                                                                       
Query: 185 tatcagtgtgctaatcacatctgtcagatctcacagagccagtgtacctagggtcaacca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tatcagtgtgctaatcacatctgtcagatctcacagagccagtgtacctagggtcaacca 255

                                                                       
Query: 245 acaatttgtgtctccgggtctgaagacttccccctccaccccagaactgcggcagtgaga 304
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gcaatttgtgtctccgggtctgaagacttccccctccaccccagaactgcggcagtgaga 195

                                                                       
Query: 305 aattgctgggagatgaaggctcttgggagcagccgccaattgttcaattcaatcaatggt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 aattgctgggagatgaaggctcttgggagcagccgccaattgttcaattcaatcaatggt 135

                                                                       
Query: 365 tctcagtaactggagcataaacatcctggctctctggccctttgggtaggataattatga 424
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 134 tctcagtaactggagcataaacatcctggctttctggccctttgggtaggataattatga 75

                                                                       
Query: 425 ggcataaacttcatattctttcccaggggaccatgcttgagttgcccactaaggaagctg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74  ggcataaacttcatattctttcccaggggaccatgcttgagttgcccactaaggaagctg 15

                         
Query: 485 gctcactgcatgcc 498
           ||||||||||||||
Sbjct: 14  gctcactgcatgcc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space:   588849
Effective search space used:   588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)