BAC Information

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BAC

Clone NameMSMg01-261M17
Chromosome7 (Build37)
Map Location 130,269,758 - 130,427,421
singlet/doubletdoublet
Overlap geneTnrc6a, Slc5a11, Arhgap17
Upstream genePalb2, Dctn5, Plk1, Ern2, 2010110P09Rik, Prkcb1, LOC668486, Cacng3, 4930413G21Rik, Rbbp6, LOC628696, LOC100042977, LOC100042981
Downstream geneLcmt1, Aqp8, Zkscan2, LOC100043482, EG628779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-261M17.T7 (MSMg01no261_m17.b1)MSMg01-261M17.TJ (MSMg01no261_m17.g1)
ACCAG404074AG404075
length756777
length of high quality
(start - end)		672 (68 - 739)405 (81 - 485)
definitionCHROMAT_FILE: MSMg01no261_m17.b1 PHD_FILE: MSMg01no261_m17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:16 2005CHROMAT_FILE: MSMg01no261_m17.g1 PHD_FILE: MSMg01no261_m17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,426,750 - 130,427,421)(130,269,758 - 130,270,143)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATCCGCGGAA
TTCTGGACCATTCTCAATGTCAGGCTCTCATTGTAACTGTAGAGCAGTAG
AAGTTTAGCAAAGAGTATTCTAATTTAAACATTTTATTAAATGATTTAGA
TGTATGACCTGCCATATTCAGTAAGAACTGAAATTGGAATGATTAATGGT
AAGGAAAAGGCAACTGATTGGCCAAAGCATCTTTGCTACTTTATGATCGT
ATTTGTGCACTAATGGCTGCCACTAACCAAGTCACCCTAACCTTGCCTGC
CCGCACCCCTACTAATAGTGCATGTACTAAGGAGAGCTCGCTGTGTCCAT
GCCTGCTCCTCATTGCTCACGGACTTTAACAGGTGGTCACTGGGCTGGCC
TTGGTACTCCTTCATTTGCATTCCTTCCTCTTCTAGCAGGCTTGAGATGT
AGTAGACAGAGCATGTGCTATAGCATGGGGAAGGCACAACCTGGTTGATG
TGTCAAGGGTCCACATTAGGCACAACGAGTAAAGAGATTAAATCAGATGA
AATAAGAAAGGCTCTAACGGCCCATAATAGCAGGGGGTGAGCGAACGACA
GTTATCTGTTACCATATTACATGCCAGACTAGGCCTTGTAGGACCCAGAG
AGAGACAAGAGGTCACAGGCACCACTTAGGTATTCAGATCTTTATTTTCT
AGTTGCAGAAGTCTGCTTCTAGCCTGCCTTTAAAGGCTGTCTCGCCCTGT
TTTCTG

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCCACTTAAAATGACCTTG
ACTCTTGGCAGGTCACTTAGCCTCTGTCTAATCTATGAAACGAGAGGCTT
GGGCCATCTTAGTTACTAAGGTCTGTTAGACCCCCTTAGGTCAGTGTCCA
CAGAGGGCATGTACAATTAGGTGGGAGAGCTCTCATATATACTTAAATAA
CGGTGATACAAGGTAGTTGATGGAAGGGTCGAGAGGAGATGTCATTTCAT
TCTCCTGCTTGAGGAGATTCATTCATAAGATCATTAGGTATGAAAAAGAA
ATATATAGACAGTTTAAGGCAGAACGTCCAGTGAGGTGGGACCAGTTCTT
TTTGTTTAAAGTTAAGGTGCTTTGAGTAGGAGGAAGGTGATTAGATTAGA
TTAGATTAGATTAGATTAGATTAGATTAGATTATACCTACTCCTACTTTA
TATTTTTCCCCTTTTCCCCTCCATACTCTTCCATCTTTGTATTTTTTTTA
CTTTTTTTCACGCAAAATTACCCTATTTTCCTTTTCTCCCTATATATTTT
ATCCCTCCCTTCTTCTTTTTCTTCTCTCCCCCTTTTTTTCCTTTAACTTC
TTTTTTCCCCCCCTTTTTATTCTTTTCTTCTCCCCCCCCTCTCTATTCTT
TTATTTTCCCCACCTATATCCATCACCCTTTTTTTTACCGCACTTTTTTT
TATAATAATTACCCACCTTCTATATCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no261_m17.b1 MSMg01no261_m17.b1 CHROMAT_FILE:
MSMg01no261_m17.b1 PHD_FILE: MSMg01no261_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:16 2005
         (672 letters)



>mm_chr7_130426550_130427621
          Length = 1072

 Score = 1245 bits (644), Expect = 0.0
 Identities = 665/672 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtcaggctctcattgtaactgtagagcagtagaagtttagcaaagagtattctaattta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872 tgtcaggctctcattgtaactgtagagcagtagaagtttagcaaagagtattctaattta 813

                                                                       
Query: 61  aacattttattaaatgatttagatgtatgacctgccatattcagtaagaactgaaattgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 aacattttattaaatgatttagatgtatgacctgccatattcagtaagaactgaaattgg 753

                                                                       
Query: 121 aatgattaatggtaaggaaaaggcaactgattggccaaagcatctttgctactttatgat 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 752 aatgattaatggtaaggaaaaggcaactgattggccaaagcatttttgctactttatgat 693

                                                                       
Query: 181 cgtatttgtgcactaatggctgccactaaccaagtcaccctaaccttgcctgcccgcacc 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 cgtatttgtgtactaatggctgccactaaccaagtcaccctaaccttgcctgcccgcacc 633

                                                                       
Query: 241 cctactaatagtgcatgtactaaggagagctcgctgtgtccatgcctgctcctcattgct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 cctactaatagtgcatgtactaaggagagctcgctgtgtccatgcctgctcctcattgct 573

                                                                       
Query: 301 cacggactttaacaggtggtcactgggctggccttggtactccttcatttgcattccttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 cacggactttaacaggtggtcactgggctggccttggtactccttcatttgcattccttc 513

                                                                       
Query: 361 ctcttctagcaggcttgagatgtagtagacagagcatgtgctatagcatggggaaggcac 420
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 512 ctcttctagcaggcttgagatgtagtagacagggcatgtgctatagcatggggaaggcac 453

                                                                       
Query: 421 aacctggttgatgtgtcaagggtccacattaggcacaacgagtaaagagattaaatcaga 480
           |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 452 aacctggttgatgtgtcaagggcccacattaggcacaacgagtaaagggattaaatcaga 393

                                                                       
Query: 481 tgaaataagaaaggctctaacggcccataatagcagggggtgagcgaacgacagttatct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tgaaataagaaaggctctaacggcccataatagcagggggtgagcgaacgacagttatct 333

                                                                       
Query: 541 gttaccatattacatgccagactaggccttgtaggacccagagagagacaagaggtcaca 600
           |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gttaccatgttacatgccaaactaggccttgtaggacccagagagagacaagaggtcaca 273

                                                                       
Query: 601 ggcaccacttaggtattcagatctttattttctagttgcagaagtctgcttctagcctgc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ggcaccacttaggtattcagatctttattttctagttgcagaagtctgcttctagcctgc 213

                       
Query: 661 ctttaaaggctg 672
           ||||||||||||
Sbjct: 212 ctttaaaggctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1072
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1062
Effective search space:   703044
Effective search space used:   703044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no261_m17.g1 MSMg01no261_m17.g1 CHROMAT_FILE:
MSMg01no261_m17.g1 PHD_FILE: MSMg01no261_m17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:16 2005
         (405 letters)



>mm_chr7_130269558_130270362
          Length = 805

 Score =  731 bits (378), Expect = 0.0
 Identities = 384/386 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgccacttaaaatgaccttgactcttggcaggtcacttagcctctgtctaatctatgaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgccacttaaaatgaccttgactcttggcaggtcacttagcctctgtctaatctatgaaa 260

                                                                       
Query: 61  cgagaggcttgggccatcttagttactaaggtctgttagacccccttaggtcagtgtcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgagaggcttgggccatcttagttactaaggtctgttagacccccttaggtcagtgtcca 320

                                                                       
Query: 121 cagagggcatgtacaattaggtgggagagctctcatatatacttaaataacggtgataca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 cagagggcatgtacaattaggtgggagagctctcatatatacttaaataacggtggtaca 380

                                                                       
Query: 181 aggtagttgatggaagggtcgagaggagatgtcatttcattctcctgcttgaggagattc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggtagttgatggaagggtcgagaggagatgtcatttcattctcctgcttgaggagattc 440

                                                                       
Query: 241 attcataagatcattaggtatgaaaaagaaatatatagacagtttaaggcagaacgtcca 300
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 attcataagatcattaggtatgaaaaagaaatatataaacagtttaaggcagaacgtcca 500

                                                                       
Query: 301 gtgaggtgggaccagttctttttgtttaaagttaaggtgctttgagtaggaggaaggtga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgaggtgggaccagttctttttgtttaaagttaaggtgctttgagtaggaggaaggtga 560

                                     
Query: 361 ttagattagattagattagattagat 386
           ||||||||||||||||||||||||||
Sbjct: 561 ttagattagattagattagattagat 586


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 805
Length adjustment: 9
Effective length of query: 396
Effective length of database: 796
Effective search space:   315216
Effective search space used:   315216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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