BAC Information

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BAC

Clone NameMSMg01-262K18
Chromosome7 (Build37)
Map Location 30,599,640 - 30,599,976
singlet/doubletsinglet
Overlap genenone
Upstream geneHnrpl, Ech1, Lgals4, Lgals7, Capn12, Actn4, Eif3s12, Map4k1, Ryr1, Rasgrp4, 1110006G06Rik, Spred3, Ggn, Psmd8, A230107C01Rik, Kcnk6, Yif1b, Spint2, Ppp1r14a, Neud4, Sipa1l3, LOC100043791, 4932431P20Rik, 4930432E11Rik, 1700067C01Rik, Zfp84, LOC100043794, Zfp30, EG625349
Downstream gene6330581L23Rik, BC027344, Zfp420, Zfp27, Zfp74, LOC625437, LOC100043796, Zfp568, Zfp14, LOC100043798, Zfp82, Zfp566, Zfp260, Zfp382, Zfp146, EG330503, Cox7a1, Capns1, Tbcb, Polr2i, Ovol3, Wdr62, EG668354, 1700020L13Rik, Clip3, Alkbh6, AI428936, 0610010E21Rik, Lrfn3, Tyrobp, Hcst, AY078069, Aplp1, Kirrel2, Nphs1, LOC100034728, Prodh2, Gm1082, Snx26, BC053749, Hspb6, 1810054G18Rik, Psenen, U2af1l4, Tmem149, Wbp7, Zbtb32, Upk1a, Cox6b1, Etv2, 3100004P22Rik, 2310022K01Rik, 4930479M11Rik, 2200002J24Rik, EG233075, Atp4a, Tmem147, Gapdhs, Sbsn, Dmkn, Krtdap
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262K18.T7 (MSMg01no262_k18.b1)MSMg01-262K18.TJ (MSMg01no262_k18.g1)
ACCAG404709AG404710
length756753
length of high quality
(start - end)		370 (34 - 403)337 (68 - 404)
definitionCHROMAT_FILE: MSMg01no262_k18.b1 PHD_FILE: MSMg01no262_k18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:23 2005CHROMAT_FILE: MSMg01no262_k18.g1 PHD_FILE: MSMg01no262_k18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGATCCGCGGAATTCTCTG
GTGACCAGCGAGGTGTGCGTGTTGCCTGAAGGTTTTCTTGCATTCTTTAC
ATTCACAGGGTCTCTCTCCTGTGTGGATTCTCTGATGTTGGGCAAGGGAT
CCACAGTAACTGAAAGCCTTCCCACAAACATTACACTCGTAGGGCTTCTC
CCGAGTGTGAACTCTCTGGTGCTGAGCAAGGGAGGAGTCATTGCTAAAGG
CCTTCCCACACTTGATACACTCATAGGGCTTCTCCCCAGTGTGAACTCGC
TGGTGCTGATTTAGGTAGGCAATCTGGCTGAAGGCCTTCCTACATTCTTG
GCACTTATACGGTTTTTCTCCGGTATGAATTCTCTGATGTTGATCAAGGT
GGCACCCCTGGCTGAAGGCCTTCCCACATTCCTTACATTCATAGGGTCTC
TCCCCTGTGTGAACTCTCTGATGCACAGTGAGGTATGCACGAAGGCTAAA
TGCTTTCCCACAGACCCTGCACTCATAAAGTTTCTCTCCGGAGTGAATTC
TCTGGTGTTGAGCAATGGATGACCTATTGCTTACAGCTTTCCCACATTCG
ATACATTCATAGGGCTTCTCCCCTGTTGTGAACCCCCTGATTGTTGTATA
AGGCACCTCAATTGGTTGAAATTCCTTCCTGCAAACCTTAAACCAATAAA
GACTAACCTCCCGGGCCGAAACTCATTTGAGATTCACCAACATTGCCAAC
TCTGCN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCCTTTGTGTTGTGAAAGAAAAGAAATCAGGTA
AATGGAGGATGATAAAGGATTTAAGAGCAGTTAATACGGTACAATGAAGC
AAAGATCAGCAAAGACTTGAAACCAGCAAAGCAATGCAAAGCTAGCTATA
CACTAGTCACTGTGGGTTGACTCCTATTTATACTCTCTCCAAATATCACA
TGGGTCTGCATCACCTGACATTTCCTTAAACTTCCACTTCAGGGTACACT
ACAGGAATGCAGTCACAGGATGGGCCAGAATTTTCAACAGAAGGAAAACA
AGCCCCATCTTGACAAAAGTAAAGGGATGTCAGGAAATCATAAGCTACAG
GACAGAGCTCAGGAATTTTAAAAAAAAAAAAGTGTGACACACACTAGGCT
CTTGTAGATGCATATTCAACCATTTCAGAGATCATTTTGGCCCATCAGCC
ATAGCACCTATCAAGAAATCAGAGAAGTCTAGGGGCTTCCTATGCCATGC
AAACACCAGACAAAAGTAGGGCGATTGTAGATAATCACAGAGCCTACCCC
CCCCGATGTGACCCTAGTCCCCTTCGGCTGTACCCTCTAAGCCACCAATT
TGCTTCACCTCAAAAGTATCTCCAAATCACCCTCACTCCTTCCTCCATCC
CACAGCTCTTGTTTTCCCCCCCTTTTATAACCCACTCTACCCCCATTTTT
GTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_k18.g1 MSMg01no262_k18.g1 CHROMAT_FILE:
MSMg01no262_k18.g1 PHD_FILE: MSMg01no262_k18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:23 2005
         (337 letters)



>mm_chr7_30599440_30600176
          Length = 737

 Score =  629 bits (325), Expect = 0.0
 Identities = 334/337 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctttgtgttgtgaaagaaaagaaatcaggtaaatggaggatgataaaggatttaagag 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 tcctttgtgttgtgaaagaaaagaaatcaggtaaatggaggatgataaaggacttaagag 260

                                                                       
Query: 61  cagttaatacggtacaatgaagcaaagatcagcaaagacttgaaaccagcaaagcaatgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagttaatacggtacaatgaagcaaagatcagcaaagacttgaaaccagcaaagcaatgc 320

                                                                       
Query: 121 aaagctagctatacactagtcactgtgggttgactcctatttatactctctccaaatatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagctagctatacactagtcactgtgggttgactcctatttatactctctccaaatatc 380

                                                                       
Query: 181 acatgggtctgcatcacctgacatttccttaaacttccacttcagggtacactacaggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acatgggtctgcatcacctgacatttccttaaacttccacttcagggtacactacaggaa 440

                                                                       
Query: 241 tgcagtcacaggatgggccagaattttcaacagaaggaaaacaagccccatcttgacaaa 300
           ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 441 tgcagtcacaggatgggccagaattttcaacaggaggaaaacaagccacatcttgacaaa 500

                                                
Query: 301 agtaaagggatgtcaggaaatcataagctacaggaca 337
           |||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtaaagggatgtcaggaaatcataagctacaggaca 537


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space:   238784
Effective search space used:   238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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