BAC Information

Click to search

BAC

Clone NameMSMg01-262L22
Chromosome7 (Build37)
Map Location 92,714,043 - 92,714,364
singlet/doubletsinglet
Overlap geneVmn2r70
Upstream geneLOC100039239, Fah, Zfand6, 2610206C17Rik, EG620480, Olfr291, LOC666276, Olfr290, ENSMUSG00000070600, F830104D24Rik, LOC620641, EG620672, Vmn2r-ps68, EG620697, Vmn2r-ps69, LOC330581, LOC100039339
Downstream geneVmn2r-ps72, EG233445, Vmn2r-ps74, EG244114, EG620928, EG546980, LOC666382, LOC637652, LOC637667, EG666418, LOC100039471, EG546981, Vmn2r-ps86, Vmn2r76, Olfr310, Olfr309, Olfr308, Olfr307, Olfr306-ps1, Olfr305, Olfr304, Olfr303, Olfr301, Olfr1531-ps1, Olfr300-ps1, Olfr299, Olfr298, Olfr297, Olfr296-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262L22.T7 (MSMg01no262_l22.b1)MSMg01-262L22.TJ (MSMg01no262_l22.g1)
ACCAG404763AG404764
length753734
length of high quality
(start - end)
189 (48 - 236)299 (71 - 369)
definitionCHROMAT_FILE: MSMg01no262_l22.b1 PHD_FILE: MSMg01no262_l22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:28 2005CHROMAT_FILE: MSMg01no262_l22.g1 PHD_FILE: MSMg01no262_l22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACGCGG
AATTCTTAAGGATATTTTCTCTGAGAAGGACTCTCAGCTTTTAACAAGGA
GGGGCCTAGTGAGTCTGACAAGTTTCAGGGACCTCATTATAATAGTTCCT
TATGTTTACCTTCATGCCTAAGTAACTTTCTGGTCATTGGAAATATCACC
AATTATTCTAGCACTTCCTATCTTTTTTATATTCTCNNTCTGGCNNCTCC
TTTTCAGCAGTCATCACTTTACCTTACAGNGAAATGATTATACATGGTCC
AAAAATGGCTNAAAATAATAAGTCAAAATGTCATAGAAACAAACACTTTG
TTTTTCATGAATCTTTCACCCATTAAATTTATAAACTTTGGAGGAATGAC
CCTCAAAAATTTAAATGGGTAGGGCCACCCCTTTTTTTTCCACCTTTTTC
CACCTTCCCCCCCACACTCATTTTTTTTTTTACCACATCTCTCTTCACAT
TTTTTATCCTATTATTCATAAATATAAAACCCCTTAAAATTTTATTCCAC
TTTTTTTTTTATTCCCCTCTAATAATAAAACTTAATTCTATATACGCTAT
CCATTTTATTTTTTCCTCGTATTTTCCCTCACTCACCTAAACACGAACTA
TATTTCCCCCCCTCCCCCCCCACATCCCTACACTCCCACATTCTACCCAC
TATTTCTACATATTGTTTTCGTACTTAACCCCACCTCTCGTTCTATTCTT
GTT
CATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTTCGAATTCCTGAGGTAAGTCAAGTAAAGATGGATTA
ATTTTAAGGAAATTCTTTTTCACCACAGTGAGACTTTTTGAATATGAAGG
CAGTTTAAAGGGAGAGAAAGGGATTATTAATATATAGATATGTTTTGTGG
CACACAAAACAACTTTATCATACATGGAAATGGGAGACAGCAGTATTGTG
AACTGTTATACCAGAAGACTCAGTATACATGTACTGTTTAGAGAATCACA
GGAGGTTTGATACAATAGTAATAATGATATTAAGAATAAACACTTTCTCG
CATGAATATACTTTGCTCAAGCAAAACCCGATCTCACCAGTATCCCTCTA
AATTCCATCAAGTTCATAGTGTTATCTATGTTCTGTATATTTCAGCTTTA
CTGCGGTCATTTTCATCTTCCTCTTAGTAATAATGAACAATTTCCTCATC
TTTACCAACTATCTATATAGGACACATCTCTACCACTAGCCATGGTGTCC
CTATTTGCCCATTCCAGATGGAACTGGATTCGAGCACCCCTTACACATGA
TGACCCTGCCATTCCATTCCTTTCTGAATTGACAGGATAAACGCCTCACA
CCCTTGTTTGTCTATCCCGCGTCTTCATCACCTAATCTCCCAAGCCCGTC
GTCCCCTACCGATTCATCTCTTGCCCTCCCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_l22.g1 MSMg01no262_l22.g1 CHROMAT_FILE:
MSMg01no262_l22.g1 PHD_FILE: MSMg01no262_l22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:28 2005
         (299 letters)



>mm_chr7_92713738_92714436
          Length = 699

 Score =  514 bits (266), Expect = e-150
 Identities = 297/322 (92%), Gaps = 23/322 (7%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcctgaggtaagtcaagtaaagatggattaattttaaggaaattctttttcaccacagtg 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 tcctgaggtaaatcaagtaaagatggattaattttaaggaaattctttttcaccacagtg 568

                                                                       
Query: 61  agactttttgaatatgaaggcagtttaaagggagagaaagggatt--------------- 105
           |||||||||||||||||||||||||||||||||||||||||||||               
Sbjct: 567 agactttttgaatatgaaggcagtttaaagggagagaaagggattatatttattatgatc 508

                                                                       
Query: 106 --------attaatatatagatatgttttgtggcacacaaaacaactttatcatacatgg 157
                   ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ggtaaagcattaatatatagatatgttttgtggcacacaaaacaactttatcatacatgg 448

                                                                       
Query: 158 aaatgggagacagcagtattgtgaactgttataccagaagactcagtatacatgtactgt 217
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 aaatgggagacagcagtattgtgaactgttataccagaagactcagtatacatgtactgt 388

                                                                       
Query: 218 ttagagaatcacaggaggtttgatacaatagtaataatgatattaagaataaacactttc 277
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 387 ttagagaatcacaggaggtttgatacaatagtaataatgagattaagaataaacactttc 328

                                 
Query: 278 tcgcatgaatatactttgctca 299
           ||||||||||||||||||||||
Sbjct: 327 tcgcatgaatatactttgctca 306


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 699
Length adjustment: 9
Effective length of query: 290
Effective length of database: 690
Effective search space:   200100
Effective search space used:   200100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)