Query= MSMg01no262_p09.b1 MSMg01no262_p09.b1 CHROMAT_FILE:
MSMg01no262_p09.b1 PHD_FILE: MSMg01no262_p09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:44 2005
(343 letters)
>mm_chr7_30112905_30113647
Length = 743
Score = 410 bits (212), Expect = e-119
Identities = 334/436 (76%), Gaps = 98/436 (22%)
Strand = Plus / Plus
Query: 1 gcctggtctacagagtgagttctaggacagtcagggctacacagagataa-----ca--- 52
|||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 113 gcctggtctacagagtgagttctaggacagtcagggctacacagagataaaaaaccaaac 172
Query: 53 ca-------ccaaactaaaccaaaccaaaaatcaaagcaaataaaaaaaaacaaaaaaca 105
|| |||||| |||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 173 caaaccaaaccaaaccaaaccaaaccaaaaatcaaagcaaataaaaaa---caaaa--ca 227
Query: 106 aaccaaacacaatcaataaaccaaaccaaaactaaaccaacccaacccaacccaactctc 165
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 228 aaacaaacacaatcaataaaccaacccaaaactaaaccaacccaacccaacccaactctc 287
Query: 166 ccctgcaaaccgaagccgagacaacccagggtcctgcacatgagcactccacctgggttc 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 ccctgcaaaccgaagccgagacaacccagggtcctgcacatgagcactccacctgggttc 347
Query: 226 tctgccag---------------------------------------------------- 233
||||||||
Sbjct: 348 tctgccagggtcctacacatgagcactccacctgggttctctgccagggtcctgcacatg 407
Query: 234 --------------------------ccccccaattcccagtctgaggaggcacagccat 267
||||||||||||||||||||||||||||||||||
Sbjct: 408 agcactccacctgggttctctgccagccccccaattcccagtctgaggaggcacagccat 467
Query: 268 ggtctgagggtctggcaaataggaagctgtaaaggcttcccctcagagaaggtgtctttc 327
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 ggtctgagggtctggcaaacaggaagctgtaaaggcttcccctcagagaaggtgtctttc 527
Query: 328 ttctgttctgccggct 343
||||||||||||||||
Sbjct: 528 ttctgttctgccggct 543
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space: 245156
Effective search space used: 245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no262_p09.g1 MSMg01no262_p09.g1 CHROMAT_FILE:
MSMg01no262_p09.g1 PHD_FILE: MSMg01no262_p09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:44 2005
(344 letters)
>mm_chr7_30324383_30325127
Length = 745
Score = 658 bits (340), Expect = 0.0
Identities = 343/344 (99%), Gaps = 1/344 (0%)
Strand = Plus / Minus
Query: 1 tgttgccagcagctgcatgccaacagccacctgcaattccagctctggggagtctgaagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 tgttgccagcagctgcatgccaacagccacctgcaattccagctctggggagtctgaagc 605
Query: 61 tccccgacttccgcaggtaccgcgctcacacatggtgcacataaatacataaaggtaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 tccccgacttccgcaggtaccgcgctcacacatggtgcacataaatacataaaggtaaaa 545
Query: 121 agacatgtacatgtcaaaaccttctgaaaattagtaacataggagctagagatgtgcagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 agacatgtacatgtcaaaaccttctgaaaattagtaacataggagctagagatgtgcagc 485
Query: 181 tcagggctaggatggatgctttccatgacaacagcatgggctcagttctcagagctagca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tcagggctaggatggatgctttccatgacaacagcatgggctcagttctcagagctagca 425
Query: 241 tgcatacctaaacttttttatgtttgttacaattttactaatgccttttaaatg-ttttt 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 424 tgcatacctaaacttttttatgtttgttacaattttactaatgccttttaaatgtttttt 365
Query: 300 ttatctctgtgtgtgtgatgtgcgtcttcggcaacaatgtctta 343
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ttatctctgtgtgtgtgatgtgcgtcttcggcaacaatgtctta 321
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 745
Length adjustment: 9
Effective length of query: 335
Effective length of database: 736
Effective search space: 246560
Effective search space used: 246560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
