BAC Information

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BAC

Clone NameMSMg01-263A15
Chromosome7 (Build37)
Map Location 5,647,827 - 5,648,133
singlet/doubletsinglet
Overlap genenone
Upstream geneBrsk1, BC022651, Suv420h2, Cox6b2, 4930401F20Rik, Il11, 4930572D21Rik, 2210411K11Rik, Rpl28, Ube2s, D430041B17Rik, Isoc2b, Isoc2a, LOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049, Gm1079, Gm1078, Zfp579, Fiz1, Zfp524, 6430526N21Rik, 4632433K11Rik, Zfp784, Zfp580, Ccdc106, U2af2, Epn1, Rfpl4, Rasl2-9, EG665126, V1rd5, V1rd3, EG665150, Nlrp2, EG272350, V1rd4, EG665163, V1rd10, EG630071, EG665255, EG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627
Downstream geneLOC100041637, V1rd1, LOC100041647, V1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263A15.T7 (MSMg01no263_a15.b1)MSMg01-263A15.TJ (MSMg01no263_a15.g1)
ACCAG404971AG404972
length764746
length of high quality
(start - end)
311 (47 - 357)660 (74 - 733)
definitionCHROMAT_FILE: MSMg01no263_a15.b1 PHD_FILE: MSMg01no263_a15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:50 2005CHROMAT_FILE: MSMg01no263_a15.g1 PHD_FILE: MSMg01no263_a15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:50 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTCCCATACTATTGATGAGAGCAAAGTGCACACACATGACCAAT
GATGCATCTACAAAAAGGCAGGAAATACCAAAGTGCACATGAATAGCAAG
ATCCCTATCAGTCTGTGTGTGGGTAAGGGAAGGCAATGCTAATGGCAGTG
ATGCAATGAAGGCTTCTTTGACTATAATTTGACAGTAGTTTCTCAGAAAA
TCTTGTAAAACAACTTCTTTGGGGATGGGGGGATAGCCCAACTGCAAAGA
ACAGGTGTTACTCATTTAAAGGACCTGATTTTGGTTCTCATTACCAGTGT
GAATTGGCTCACATCTGTGTAGTTTTCCCCCCCCCCCCCCTCAATTCATA
TTTCTAGTCTTCTTTGCCATTACCCCCCAAAGCAAATAAACAAAGTCTGA
CTCCCATTTGTACATTCAAAACTAACACCTTTTAGACCAACTATTAACAT
AGCCTTATGAACTTATCTCTTGTACCCTTCTATTGCTTCTGATGTAAACC
GATCCCTTTGTATTAACCCCTTTTCCCCTCTTTATTTCCTTTTTACTTAC
AAATTTTTTTCTTCCTGTCTCTTTCTTTTCCTCTTCTTTTCTATTTCTTC
TCACTTTCTCTTCTCATCTTCTTTTTATTCATCTTTCAATCCTTCTTACA
TATCTTTTTTTTATTCTTCTTTTCTTAACCTTTTTCTATTATCTTTTTCC
TTTTCACTCCATAG
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCCTCTGAAGAAACAGACTTGGAGGAG
GAAGCAGCTCATTATGAGAGAAAAGGGTACCAGCCAGATAAAATGCTAGC
TAATCAGTTAAGGAAAAAGCCAAAAGCGGCTGGCGAAGGCCAGCATGCTG
CTCAGCCTCCGGGCAGTCGGCTTCAAGGTCATAGTGCACTTCCGCCCTAT
GCGGAGCCCCCGCCCTGCGTAGTGCGTCAGCCCTGCGCAGAGAGGCAATG
GACAGAGAGGCAATGCACAGACTCGTTCATTCCAAAGGAGGAACAAAGGA
AAATACAACAGGCATTTCCAGTCTTTGAAGGAGCTGAGGGTGGGCGTGTC
CACGCTCCGGTAGAATATGTGCAGATTAAAGAGCTTGCCGAGTCGGTCTG
TAAATATGGAACCAATGCTAATTTTACCTTGGTGCAGTTAGACAGGCTTG
CCGGCATGGCACTAACTCCTGCCGACTGGCAAATGATTGCAAAAGCCGCT
CTCCCTAGTATGGGCAAATATATGGAATGGAGAGCTCTATGGCAAGAGGC
TGCACAAGCGCAGGCCCGAGCAAACACTGCTGCTTTGACTCCAGAGCAGA
GAGATTGGACTTTTGACTTGTTAACGGGTCAGGGAGCTTATACTGCTGAT
CAAAGAAACTACCACTGGGGAGCTTATGCCCAAATTTCCTCCCCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_a15.b1 MSMg01no263_a15.b1 CHROMAT_FILE:
MSMg01no263_a15.b1 PHD_FILE: MSMg01no263_a15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:50 2005
         (311 letters)



>mm_chr7_5647623_5648333
          Length = 711

 Score =  524 bits (271), Expect = e-153
 Identities = 298/307 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttcccatactattgatgagagcaaagtgcacacacatgaccaatgatgcatcta 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gaattcttcccatacaattgatgagagcaaagtgcacacacatgaccaatgatgcatcta 452

                                                                       
Query: 65  caaaaaggcaggaaataccaaagtgcacatgaatagcaagatccctatcagtctgtgtgt 124
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 caaaaaggcaggaaatattaaagtgcacatgaatagcaagatccctatcagtctgtgtgt 392

                                                                       
Query: 125 gggtaagggaaggcaatgctaatggcagtgatgcaatgaaggcttctttgactataattt 184
           ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 391 gggtaagggaaggcaatgctaatggcaatgatgcaaggaaggcttctttgactataattt 332

                                                                       
Query: 185 gacagtagtttctcagaaaatcttgtaaaacaacttctttggggatggggggatagccca 244
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 331 gacagtagtttctcagaaaatcttgtaaaacaacttcttgggggatggggggatagccca 272

                                                                       
Query: 245 actgcaaagaacaggtgttactcatttaaaggacctgattttggttctcattaccagtgt 304
           |||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||
Sbjct: 271 actgcaaagaacaggtgttactcatttaaaggacctgagtttggttctcagcaccagtgt 212

                  
Query: 305 gaattgg 311
           |||||||
Sbjct: 211 gaattgg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)