BAC Information

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BAC

Clone NameMSMg01-263L01
Chromosome7 (Build37)
Map Location 57,327,315 - 57,327,629
singlet/doubletsinglet
Overlap geneNell1
Upstream gene9130015G15Rik, 5330421F07Rik, Dbx1, Htatip2, Prmt3, Slc6a5
Downstream gene4933405O20Rik, EG668766, EG668767, EG668768, EG638046, EG668770, EG668774
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263L01.T7 (MSMg01no263_l01.b1)MSMg01-263L01.TJ (MSMg01no263_l01.g1)
ACCAG405443AG405444
length740836
length of high quality
(start - end)
319 (52 - 370)150 (130 - 279)
definitionCHROMAT_FILE: MSMg01no263_l01.b1 PHD_FILE: MSMg01no263_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:40 2005CHROMAT_FILE: MSMg01no263_l01.g1 PHD_FILE: MSMg01no263_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCCATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAAGACAGTGTTATAAAACGAAACAAAAGTGCTAATATGA
GTATTGGAATTTAAGATATAGGATTTTCACTATTTTAAAATTATGAAATT
TTACAGCAAACAAATCAAAAGGGTTGTTTAAAACAATAAAATGCTTAGCA
CATGGCTTACAATCAGTGAATGTTATCTTTTTAGAAAACACTCCAAATAT
CTTAAAATCAGCTAAACCTCTATTTTGAAAACCAGACTAAAAATACCCAA
AGAATACTTCAGAACTAAGACTCTCTTATGAATAAGATATAAAACTCTTC
AATGCCGTACATAACAAATATTTTTACATCCACGCACCCTCACAAAATTG
ACTGCATCACAACCAAGTGGCTATTCAATCTGAGAAAACATTCCAAATGC
AACCCAAGGCTGGCAAGATGGCTCAGCAGGTAAAGGCACTTGCTGCCAGA
CATGACACCTGGAGTTTGATCCCAAAACCCCCAGGGTAGACAGAGAGAAC
CAACTCCTACAATTTGTCCTCTGACCTTCATACACATGTGCCACAGCAGG
AGCACAAATACACTCATATGTATATGTATGCACATGCACACACATACTCA
AATTAATAAAGTAATAAATATCACCCATGACACAATGTTAACCTAAACAA
TGTGACATAATGACAAAATTCCACATGGCTGGCATGAGGT
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTACAGAGTGACTTTTTAATTATTA
CAGCAGTAGAGGAAATCTGTGTCTCCCAGATGGCTCAACAGTTAAAGTCA
CCTACTGCCAAGTCTGATGACCTGAGTTCAATCCTAGGGCCCATGTGGTA
GAAGAGAACCAGCTCCCACAAGGTGCCCTTGTATCCCCATATGTGGGCTG
GACTCGCCCCCCAAATACAAGTAAACACACAAAATAAAATGTGCTTGTGA
TGGTTTGTATATGCCCTGCCCAGGGAGCAGAACTATTTGAAGGTGTGGTC
CTGTTGTAGTATGTGTGTTTTTGTGCCCGCGCCCCATAAGATTTTTTCTT
AGTTGCCTGGAAATCCCCCCCCCATTTAATAACCTTTAAATGTATATGGT
TGTATTCTTCTCACCCCCCTGCCCTTTTTTCCGCCCTGTTTCCACCTCTG
GCCCCCGCCTTTTATTATTCTCGTTTTGTCTTCTCTCCCACCCTTTATAA
TTTCTCCTATTTTATCTTTTATCTTTCCCCCCCCTCCTACTACGTTTGGT
ATTTATACGGGCCCTGTTTTCTTATCATTCCCACCCCCCCTTCCCTATAT
ATTATTGTGTTTATTCTTTAGGTCTTTCCCGGCTCTCCTCTCCCTCTACA
CCCTTTCTTTCTTTTTTTTACCGTACCACTTTTTCTCTTTCTCTTCTAAT
TCTTACTCTCCCCTCTGTCTTCTTCCATCTGTCGTCTTTTTTCTTTTATC
GTCTTTTCCGTGGATTGTAAATTCCTGTTATTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_l01.b1 MSMg01no263_l01.b1 CHROMAT_FILE:
MSMg01no263_l01.b1 PHD_FILE: MSMg01no263_l01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:40 2005
         (319 letters)



>mm_chr7_57327111_57327829
          Length = 719

 Score =  594 bits (307), Expect = e-174
 Identities = 313/315 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaagacagtgttataaaacgaaacaaaagtgctaatatgagtattggaatttaag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gaattcaagacagtgttataaaacgaaacaaaagtgctaatatgagtattggaatttaag 460

                                                                       
Query: 65  atataggattttcactattttaaaattatgaaattttacagcaaacaaatcaaaagggtt 124
           |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 459 atataggattttcaatattttaaaattatgaaattttacagcaaacaaatcaaaggggtt 400

                                                                       
Query: 125 gtttaaaacaataaaatgcttagcacatggcttacaatcagtgaatgttatctttttaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 gtttaaaacaataaaatgcttagcacatggcttacaatcagtgaatgttatctttttaga 340

                                                                       
Query: 185 aaacactccaaatatcttaaaatcagctaaacctctattttgaaaaccagactaaaaata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 aaacactccaaatatcttaaaatcagctaaacctctattttgaaaaccagactaaaaata 280

                                                                       
Query: 245 cccaaagaatacttcagaactaagactctcttatgaataagatataaaactcttcaatgc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 cccaaagaatacttcagaactaagactctcttatgaataagatataaaactcttcaatgc 220

                          
Query: 305 cgtacataacaaata 319
           |||||||||||||||
Sbjct: 219 cgtacataacaaata 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)