BAC Information

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BAC

Clone NameMSMg01-263L13
Chromosome7 (Build37)
Map Location 83,728,386 - 83,729,001
singlet/doubletsinglet
Overlap geneEG244071
Upstream geneAkap13, Klhl25, LOC100042210, LOC434200
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263L13.T7 (MSMg01no263_l13.b1)MSMg01-263L13.TJ (MSMg01no263_l13.g1)
ACCAG405466AG405467
length751736
length of high quality
(start - end)
312 (48 - 359)615 (75 - 689)
definitionCHROMAT_FILE: MSMg01no263_l13.b1 PHD_FILE: MSMg01no263_l13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:43 2005CHROMAT_FILE: MSMg01no263_l13.g1 PHD_FILE: MSMg01no263_l13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTGGATTAATATTTTTGAGGTGGGTGGGTGGCCCCATTCCTCAA
CTGGGTGGCTGTGTCTCTCTACTGGATATGCTCTCTGCAGGTTCTACCCT
TTCTTTGTTGGGTATTTAGGCTAATGTCCTCCCTGTGGGGTCCTGGGAAC
CCCTTGGGTCCCTGGCATCTGGGACTTTCTAGCAGCTAACCTCACTTTCC
CCCACTGCAGCACATGTACTTTTAAATTCCTGACCCTCTGTACTTCTCCC
CCATCTCCTCCCATATCTGATCTGTCCCCCTTTTTTCCTTCCCCCTCTCT
CTCCCTCCCATATTCTATTAGACTCCCACCCCGAACTCAAGGCATCCAAT
AGTCTGAGAACACTTTGACCGCTGTGTGACATTTCTTGCCTTGACCTGAA
TTCTCATCAACAGTGCAGACTTTATTTTTTTTTTGTTTCACTGACCGTGA
TGTAATGATTTGGTTCTCTTTTTCAGCCTTCCTGTTTATGTTTACAAATA
CTGCTCTATTTGTTATGTACCCTGTTCCCTATCCATTCTGTGATTCCCTC
TTACTCATCTTTCCCCCAACTCCCCTGTACACCCTTTTTCTGTGTGCTAT
CTTCGACCTGCCACAGTTTCCAAATTATCACCCCCTCTTTTCCACTTCTT
CTATCCCGCCCCTCTTATTTCTCCCCTCCTTATTGCCCTTTATCTTTTCT
T
CCAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTCTTTAAAGATCTCTTGAGAAATTT
TCTGGTCATATGGAGCAGTAACTATCTGTGTTAGGCGCTCTTTCTCACTA
CACAATTATTAATTTCTCTTGAAAGAGGAATCTGTTACATTTCTCTTGTA
ATCTGTACTACCCTGCAGAGTGCCAGTAGGAACAGAATAGATTTTGTTGA
AAAAAGAAGGTAGAAGGTGGAAATGAACAGATGTTCATATAATTGGGCAC
ATATGTGTAATATAGTACATGCTTTAGTTTCCCCTCAACTTCTGATAAGC
TAATAGGCTAATATCTCTTGGCCATTGTTCAAGTTCATACCGTGTCCTAC
TTTTGTTTTACAGATCTCATTTTCATTGATACAAACTCAGAATCTAACTT
TTCATTTAAAATATGGCGAAATTATTGATACCCCATAGGTTGCAATGTTC
CTTTTAACCGATTTCAAGAAATTCAGAGGGGAAAAAAGTGAATATAAGTA
TGTAATTGTTTTGCCCAGCAGAAATGATTTACTATGGCCCAAATCATCAA
TTATAAGGGAAAACCTCCTAGGATGTGTTTTGCATGCTCTTTACAGCTGT
TACCTATTATGAGTTCTCAGGAGTGCCATTTGCTGCTACAACTCACTGGT
TCCGTAAGCTGAAGTCACCGATATGAATGTGTGATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_l13.g1 MSMg01no263_l13.g1 CHROMAT_FILE:
MSMg01no263_l13.g1 PHD_FILE: MSMg01no263_l13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:43 2005
         (615 letters)



>mm_chr7_83728186_83729201
          Length = 1016

 Score = 1168 bits (604), Expect = 0.0
 Identities = 613/616 (99%), Gaps = 1/616 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctctttaaagatctcttgagaaattttctggtcatatggagcagtaactatctgtgttag 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctctttaaagatctcttgagaaaatttctggtcatatggagcagtaactatctgtgttag 260

                                                                       
Query: 61  gcgctctttctcactacacaattattaatttctcttgaaagaggaatctgttacatttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcgctctttctcactacacaattattaatttctcttgaaagaggaatctgttacatttct 320

                                                                       
Query: 121 cttgtaatctgtactaccctgcagagtgccagtaggaacagaatagattttgttgaaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttgtaatctgtactaccctgcagagtgccagtaggaacagaatagattttgttgaaaaa 380

                                                                       
Query: 181 agaaggtagaaggtggaaatgaacagatgttcatataattgggcacatatgtgtaatata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaaggtagaaggtggaaatgaacagatgttcatataattgggcacatatgtgtaatata 440

                                                                       
Query: 241 gtacatgc-tttagtttcccctcaacttctgataagctaataggctaatatctcttggcc 299
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtacatgcctttagtttcccctcaacttctgataagctaataggctaatatctcttggcc 500

                                                                       
Query: 300 attgttcaagttcataccgtgtcctacttttgttttacagatctcattttcattgataca 359
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attgttcaagttcgtaccgtgtcctacttttgttttacagatctcattttcattgataca 560

                                                                       
Query: 360 aactcagaatctaacttttcatttaaaatatggcgaaattattgataccccataggttgc 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aactcagaatctaacttttcatttaaaatatggcgaaattattgataccccataggttgc 620

                                                                       
Query: 420 aatgttccttttaaccgatttcaagaaattcagaggggaaaaaagtgaatataagtatgt 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatgttccttttaaccgatttcaagaaattcagaggggaaaaaagtgaatataagtatgt 680

                                                                       
Query: 480 aattgttttgcccagcagaaatgatttactatggcccaaatcatcaattataagggaaaa 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aattgttttgcccagcagaaatgatttactatggcccaaatcatcaattataagggaaaa 740

                                                                       
Query: 540 cctcctaggatgtgttttgcatgctctttacagctgttacctattatgagttctcaggag 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cctcctaggatgtgttttgcatgctctttacagctgttacctattatgagttctcaggag 800

                           
Query: 600 tgccatttgctgctac 615
           ||||||||||||||||
Sbjct: 801 tgccatttgctgctac 816


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1016
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1006
Effective search space:   608630
Effective search space used:   608630
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)