BAC Information

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BAC

Clone NameMSMg01-263O02
Chromosome7 (Build37)
Map Location 4,035,611 - 4,036,202
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041028, LOC627003, EG664817, Speer9-ps1, AU018091, LOC100041503, Nlrp12, GA_x5J8B7W3939-136239-135295, LOC384710, Myadm, Prkcc, Cacng7, LOC672553, Cacng8, Cacng6, LOC100041095, 9930022N03Rik, LOC100041109, Oscar, Ndufa3, Tfpt, Prpf31, Cnot3, Leng1, Tmc4, Leng4, Tsen34, Rps9, Lilrb3, Pira1, LOC100041137, LOC100041146, Pira2, LOC675749, LOC100038908, LOC100038909, Pira11, Pira3, LOC100041186, LOC664841, Lair1
Downstream geneTtyh1, Leng8, Leng9, Cdc42ep5, LOC384521, EG232801, Ncr1, Gp6, LOC100041851, Atp6v0c-ps1, Rdh13, Eps8l1, Ppp1r12c, Tnnt1, Tnni3, 6030429G01Rik, Syt5, Ptprh, LOC669557, Tmem86b, Saps1, EG628211, 1500019G21Rik, Brsk1, BC022651, Suv420h2, Cox6b2, 4930401F20Rik, Il11, 4930572D21Rik, 2210411K11Rik, Rpl28, Ube2s, D430041B17Rik, Isoc2b, Isoc2a, LOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049, Gm1079, Gm1078, Zfp579, Fiz1, Zfp524, 6430526N21Rik, 4632433K11Rik, Zfp784, Zfp580, Ccdc106, U2af2, Epn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263O02.T7 (MSMg01no263_o02.b1)MSMg01-263O02.TJ (MSMg01no263_o02.g1)
ACCAG405582AG405583
length736743
length of high quality
(start - end)		596 (43 - 638)667 (77 - 743)
definitionCHROMAT_FILE: MSMg01no263_o02.b1 PHD_FILE: MSMg01no263_o02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:55 2005CHROMAT_FILE: MSMg01no263_o02.g1 PHD_FILE: MSMg01no263_o02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCAATCTTCTCGTTTTTTAGTCTAAAATAAAATACAGCATTATTCTCCA
CACTTCCTTTTCCTCACACCTCAGCAAATTATGTGTGTCTGCTCCTCACA
ACTCTCCAAGGCCAGCACACATCTCACAACCTCCACCCTCAGCTATCATT
TGTAGAGTTACATGGACTCCCCTTGGCTTCTCCTAAGATGCTACCTCTAA
CCTGCCCTGGATACGATGGTGAAAGTAATCTGTTAAAAGCCTGTCAAATC
AGGGAGATGAGGGGCATTCTGGCAAGAGTGACAGATGACATAATAGCACG
AGGTGCCAAGAAGGACACCCACACACGGTACCAGTCTAGTTCGTCTCAGA
ATTTGTGCTCTTCCACATGAGAGGGGGTAATGTGCCAACTTCACGTCTGT
CATTCTTGGAAATCATTCCCTTGAGAGCAGAAGTTTGTCAGGAGCAGGAG
AGGGGTGCTGGGGAGACGCTTCCATAGATAAAGGTTCTGAGCGAACATGA
CAGCCTGAGTTCAGTTCCCAAAACCAACAGCAAGCCAGATGTGGGAGCTC
ATATCTGTAATCCCAGCACTTCTGCACTGAGATGAGATGCAGAGGCAGGA
AAATCACTCGGAAGCAACAGCAAGAGAGACTCTGTCTCAATGAGATGGAA
GGAGAAGACCAACTCTTCATGACAATTTTCTCCTGA

CACGATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACATAAAACCAGAGACACTGAAA
CTCATAGAGGAGAAAGTAGGGAAAACCCTCGAAGATATGGGTACAGGNGG
AAAAATTCCTGAATAGAACAGCAATGGCTTATGCTGTAAGATCGAGAATC
GATAAATGGGACCTCATAAAGTTGCAAAGCTTCTGCAAGGCAAAAGACAC
CGTCAATAAGACAAAAAAACCACCAACAGATTGGGAAAGGATCTTTACCT
ATCCCAAATCATATAGGGGACTAATATCCAATATATAAAAAGAACTCAAG
AAGGTGGACTCCAGAAAAATCAAATAACCCCATTAAAAAATGGGGCTCAG
GGCTGGTGAGATGGCTCAGCGCCCAAGAGCACCCGACTGCTCTTCCGAAG
GTCCGAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTA
ACGAGATCTGACGCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTAC
TTACATATAATAAATAAATAAATAAATAAATAAATCTTTAAAAAAAAAAT
GGGGCTCAGAGCTGAACAAAGACTTCTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGATAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATGAAAACAACCCTGAGATTCTACCTCACACCAGTCAGAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_o02.b1 MSMg01no263_o02.b1 CHROMAT_FILE:
MSMg01no263_o02.b1 PHD_FILE: MSMg01no263_o02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:55 2005
         (596 letters)



>mm_chr7_4035407_4036402
          Length = 996

 Score = 1098 bits (568), Expect = 0.0
 Identities = 586/592 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaatcttctcgttttttagtctaaaataaaatacagcattattctccacacttc 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaatcttctagttttttagtctaaaataaaatacagcattattctccacacttc 264

                                                                       
Query: 65  cttttcctcacacctcagcaaattatgtgtgtctgctcctcacaactctccaaggccagc 124
           |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 265 cttttcctcatacctcagcaaattatgtgtgtctgttcctcacaactctccaaggccagc 324

                                                                       
Query: 125 acacatctcacaacctccaccctcagctatcatttgtagagttacatggactccccttgg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acacatctcacaacctccaccctcagctatcatttgtagagttacatggactccccttgg 384

                                                                       
Query: 185 cttctcctaagatgctacctctaacctgccctggatacgatggtgaaagtaatctgttaa 244
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 385 cttctcctaagatgctacctctaacctgccctggataagatggtgaaagtaatctgttaa 444

                                                                       
Query: 245 aagcctgtcaaatcagggagatgaggggcattctggcaagagtgacagatgacataatag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aagcctgtcaaatcagggagatgaggggcattctggcaagagtgacagatgacataatag 504

                                                                       
Query: 305 cacgaggtgccaagaaggacacccacacacggtaccagtctagttcgtctcagaatttgt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cacgaggtgccaagaaggacacccacacacggtaccagtctagttcgtctcagaatttgt 564

                                                                       
Query: 365 gctcttccacatgagagggggtaatgtgccaacttcacgtctgtcattcttggaaatcat 424
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gctcttccatatgagagggggtaatgtgccaacttcacgtctgtcattcttggaaatcat 624

                                                                       
Query: 425 tcccttgagagcagaagtttgtcaggagcaggagaggggtgctggggagacgcttccata 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tcccttgagagcagaagtttgtcaggagcaggagaggggtgctggggagacgcttccata 684

                                                                       
Query: 485 gataaaggttctgagcgaacatgacagcctgagttcagttcccaaaaccaacagcaagcc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gataaaggttctgagcgaacatgacagcctgagttcagttcccaaaaccaacagcaagcc 744

                                                               
Query: 545 agatgtgggagctcatatctgtaatcccagcacttctgcactgagatgagat 596
           |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 745 agatgtgggagctcatgtctgtaatcccagcacttctgcactgagatgagat 796


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space:   577796
Effective search space used:   577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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