Query= MSMg01no265_b16.b1 MSMg01no265_b16.b1 CHROMAT_FILE:
MSMg01no265_b16.b1 PHD_FILE: MSMg01no265_b16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:29 2005
(320 letters)
>mm_chr7_14016034_14016753
Length = 720
Score = 605 bits (313), Expect = e-178
Identities = 316/317 (99%)
Strand = Plus / Minus
Query: 4 ggaattctcttctttattcttgttagtccttccctcatggtccaaagtaaggggtgaggc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 ggaattctcttctttattcttgttagtccttccctcatggtccaaagtaaggggtgaggc 461
Query: 64 aatagtgtcacttatatactaatcagtaaaggactgattattatagcagcacattgttcc 123
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 460 aatagtgtcacttatatactaatcagtaaaggactgatttttatagcagcacattgttcc 401
Query: 124 atactcatgttcatcatggtgttttttgggcagaaaagcatttactggtagagagagaac 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 atactcatgttcatcatggtgttttttgggcagaaaagcatttactggtagagagagaac 341
Query: 184 aagatccttctgctttatatctattagtctcgggaactcagaattgcataaacatgctcc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 aagatccttctgctttatatctattagtctcgggaactcagaattgcataaacatgctcc 281
Query: 244 aatttgaaatctggatcccagtgagttttctctctggagagtgtgcctgtgcattctgat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 aatttgaaatctggatcccagtgagttttctctctggagagtgtgcctgtgcattctgat 221
Query: 304 atatagggaagtggcaa 320
|||||||||||||||||
Sbjct: 220 atatagggaagtggcaa 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space: 221121
Effective search space used: 221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no265_b16.g1 MSMg01no265_b16.g1 CHROMAT_FILE:
MSMg01no265_b16.g1 PHD_FILE: MSMg01no265_b16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:30 2005
(630 letters)
>mm_chr7_13960584_13961613
Length = 1030
Score = 1162 bits (601), Expect = 0.0
Identities = 622/629 (98%), Gaps = 2/629 (0%)
Strand = Plus / Plus
Query: 1 agtggagatgggaagtggatattgggcaagaatgacctcccagagattctagctctaccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtggagatgggaagtggatattgggcaagaatgacctcccagagattctagctctaccc 260
Query: 61 tactccttcattgctaggagaaaaaggagaagtatctgggtttccagaggaacactttaa 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tactccttcattactaggagaaaaaggagaagtatctgggtttccagaggaacactttaa 320
Query: 121 gtatctctcaggagctctcttgctggacaaataccatatattagtaaatattagtatatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtatctctcaggagctctcttgctggacaaataccatatattagtaaatattagtatatt 380
Query: 181 agtaatttattaaataaattaccatatattagtaaatattagtatattagtaaatattct 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 agtaatttattaaataaattaccatatattagtaaatattaatatattagtaaatattct 440
Query: 241 ggaacgttcctgaatctaatgttacagcttctgataaacagaattagaatctgtctatgg 300
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 ggaacattcctgaatctaatgttacagcttctgataaacagatttagaatctgtctatgg 500
Query: 301 gagttacatgcaatctcacctgcaaaacactagtcagtgataagcatgtgctaggatttc 360
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 501 gagttacatgcaatctcacctgcaaaacactagttagtgataagcatgtgctaggatttc 560
Query: 361 aagcataattatatatctatgtacttagcaagtaatttttgctgttctttgagcctgggt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagcataattatatatctatgtacttagcaagtaatttttgctgttctttgagcctgggt 620
Query: 421 ctcatgtattccattttgaccttaaactaaaactgtgtggctgagactagtcttgaactc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctcatgtattccattttgaccttaaactaaaactgtgtggctgagactagtcttgaactc 680
Query: 481 ttatttcttccatctcccaaatactaggattatagacatacacccccattcctagtcacc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttatttcttccatctcccaaatactaggattatagacatacacccccattcctagtcacc 740
Query: 541 gtataaattccattcccagtcaccatataattttgtgatatactatgaagtccatcatgg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtataaattccattcccagtcaccatataattttgtgatatactatgaagtccatcatgg 800
Query: 601 atctct-ccttctgcacagaaacagaggc 628
||| || ||||||||||||||||||||||
Sbjct: 801 atc-cttccttctgcacagaaacagaggc 828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space: 632400
Effective search space used: 632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
