BAC Information

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BAC

Clone NameMSMg01-265F07
Chromosome7 (Build37)
Map Location 99,391,738 - 99,438,992
singlet/doubletdoublet
Overlap geneDlg2
Upstream genenone
Downstream geneCcdc90b, Ankrd42, Pcf11, LOC676240, LOC100040007, 4632427E13Rik, Rab30, 4632434I11Rik, Prcp, A830059I20Rik, LOC100040298
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265F07.T7 (MSMg01no265_f07.b1)MSMg01-265F07.TJ (MSMg01no265_f07.g1)
ACCAG406625AG406626
length786768
length of high quality
(start - end)		320 (45 - 364)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no265_f07.b1 PHD_FILE: MSMg01no265_f07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:47 2005CHROMAT_FILE: MSMg01no265_f07.g1 PHD_FILE: MSMg01no265_f07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,391,738 - 99,392,051)(99,438,706 - 99,438,992)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGGCATTTCATTTCAGATTCACTTGCAAGTAAAGGTCAAAATGCAA
CACCATGGAAGGGTAATAGCTGATGTCCATTTCAAAGCACAGTCCATCAC
ACATAAGCTTTCAAAGGTCTAAGGTTATCCCACAGATAACCTCAGGACAG
CCTTGCTGTCCTGTAGTATAAACCTGATACAATCTTCCTTATCTTCTTCT
AGAGCTTTCTTGTACAAGTCAAGAGCCACTGAAACTGTTTCTTGGCTAAT
ATTCTTAGATCTGGTAATTACAGTGAGCTGGGGGTAAGGCGGAGAAAGAC
CAGAGGCCAGGATNCATANTCTCAGCCCCCCCCCGCGCTTCTGGTTCTTA
AAATAGTGAAATACAGAGCACCCTGCTTGGAACTAAATTCTATGTAGAAC
CCTAAGAGTGTCTCTTTCCCTGCTACTTCAGACACCCAAGCTCCCAGAAT
TTATATATATATATACACACACATATATACATATATGTGTGTGTATAAAT
GTGTATATATGTATGTATATATGTGTATAATATATGAGTTAATTTCCTTT
TCTTCTCTTAATTATTTTCACTAATTTACTCCATCACTACAACTATACTA
TAAAACATTAATCTCCTTACCTTTCCTACATTTAAATTACCATCTTAAGT
TATATTTCCACTTTATCATAATACCAATTTTATTAAATTTCATTTAATAT
ATTACATTTCATTTACAAATTGATATTACTTTCACN

ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTCATTCCACTTAGGCACCTGCT
TGCTTCTTTTGCTCATATGAACAGCTTTGATGACATGAACTAAATCCCAC
ATAGCTACTCTGGGGATTAAGGACATGTACTGGGAACTAATAATGTAGTT
GCCTAGTACTCTGAAAATTGCCATATTTGTATCCTTAACACTTCGGTTCA
TTTCCTTCATTTTTTGATACTATGTTTGTAATCCAGGCTCTATTACAGGC
TATGTGAGAACTGTTCTGTTGGACTATATCCCCAGCCAACTTTATTTGTT
GTTATGACTTTTCTTTTTTTTTGTTTCCACCCCCACACCGACACATAAAA
GTCAAATAGTGCAAACACATTGAAGTCATCCCTGTACAACATGTAGAGGA
TTACAAGTATCGATCGATTTCATTTGTACACTGCTCCCACATCACTTCTA
GTGTTTCACACAGCTTAAGACAAGTAAAATAATTCCATCTAGATTGAAAA
TCTTTGGAACCAGTTTATAGCTCTCTTTGAGCCAAGTAACGCTGCTTACT
TTCATTTCAAGAGTTCACGGAAACAAAGTGTTACCCCTTGCTAGGATCAT
GTCCACCAGAGGGATAACGTCTGATTCAAAGGGTTTGTAAGATGTCCACA
TCTTCCTTCACAGGTTTCAGAAGCCAGGTTTAACACCCTCTCCTCTCTTT
CCTCTCTCTCTCCCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_f07.b1 MSMg01no265_f07.b1 CHROMAT_FILE:
MSMg01no265_f07.b1 PHD_FILE: MSMg01no265_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:47 2005
         (320 letters)



>mm_chr7_99391534_99392253
          Length = 720

 Score =  592 bits (306), Expect = e-173
 Identities = 312/314 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctggcatttcatttcagattcacttgcaagtaaaggtcaaaatgcaacaccatgg 64
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaatgctggcatttcatttcagattcacttgcaagtaaaggtcaaaatgcaacaccatgg 264

                                                                       
Query: 65  aagggtaatagctgatgtccatttcaaagcacagtccatcacacataagctttcaaaggt 124
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 265 aagggtaatagctgatgtccatttcaaagcacagcccatcacacataagctttcaaaggt 324

                                                                       
Query: 125 ctaaggttatcccacagataacctcaggacagccttgctgtcctgtagtataaacctgat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctaaggttatcccacagataacctcaggacagccttgctgtcctgtagtataaacctgat 384

                                                                       
Query: 185 acaatcttccttatcttcttctagagctttcttgtacaagtcaagagccactgaaactgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acaatcttccttatcttcttctagagctttcttgtacaagtcaagagccactgaaactgt 444

                                                                       
Query: 245 ttcttggctaatattcttagatctggtaattacagtgagctgggggtaaggcggagaaag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttcttggctaatattcttagatctggtaattacagtgagctgggggtaaggcggagaaag 504

                         
Query: 305 accagaggccagga 318
           ||||||||||||||
Sbjct: 505 accagaggccagga 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no265_f07.g1 MSMg01no265_f07.g1 CHROMAT_FILE:
MSMg01no265_f07.g1 PHD_FILE: MSMg01no265_f07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:47 2005
         (287 letters)



>mm_chr7_99438506_99439192
          Length = 687

 Score =  501 bits (259), Expect = e-146
 Identities = 280/287 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtcattccacttaggcacctgcttgcttcttttgctcatatgaacagctttgatgacat 60
           ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 agtcattccacctaggcatctgcttgcttcttttgctcatatgaacagctttgatgacat 428

                                                                       
Query: 61  gaactaaatcccacatagctactctggggattaaggacatgtactgggaactaataatgt 120
           |||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 427 gaacgaaatcccacatagctactctggggattaagaacatttactgggaactaataatgt 368

                                                                       
Query: 121 agttgcctagtactctgaaaattgccatatttgtatccttaacacttcggttcatttcct 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 agttgcctaatactctgaaaattgccatatttgtatccttaacacttcggttcatttcct 308

                                                                       
Query: 181 tcattttttgatactatgtttgtaatccaggctctattacaggctatgtgagaactgttc 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 307 tcattttttgatactatgtttgtaatccaggctctattacaggcgatgtgagaactgttc 248

                                                          
Query: 241 tgttggactatatccccagccaactttatttgttgttatgacttttc 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tgttggactatatccccagccaactttatttgttgttatgacttttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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