BAC Information

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BAC

Clone NameMSMg01-265I10
Chromosome7 (Build37)
Map Location 28,827,453 - 28,945,209
singlet/doubletdoublet
Overlap genePsmc4, LOC100043774, 9530053A07Rik
Upstream geneLOC100043199, Cyp2f2, Gm1450, Egln2, Rab4b, Mia1, Snrpa, Itpkc, Adck4, Numbl, Ltbp4, Shkbp1, Spnb4, Blvrb, EG668045, Sertad3, Sertad1, Prx, Hipk4, Pld3, 2310022A10Rik, Akt2, Ttc9b, Map3k10, C030039L03Rik, Zfp60, LOC100043229, LOC100043233, 4933426I21Rik, Zfp59, 4732475C15Rik, Prkcz2, 1700049G17Rik, EG668175, LOC100043771, Zfp780b, C130069I09Rik, LOC100043772
Downstream geneFbl, Dyrk1b, Eid2, LOC434156, BC089491, Dll3, Timm50, Supt5h, Rps16, Plekhg2, Zfp36, Ixl, Paf1, Samd4b, 1700085B13Rik, Gmfg, Lrfn1, LOC624672, 1700028B04Rik, EG330496, Il28, Sycn, 1190020J12Rik, Pak4, C330005M16Rik, Fbxo27, Fbxo17, Mrps12, Sars2, EG624918, Nfkbib, Sirt2, 5830482F20Rik, Hnrpl, Ech1, Lgals4, Lgals7, Capn12, Actn4, Eif3s12, Map4k1, Ryr1, Rasgrp4, 1110006G06Rik, Spred3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265I10.T7 (MSMg01no265_i10.b1)MSMg01-265I10.TJ (MSMg01no265_i10.g1)
ACCAG406765AG406766
length696770
length of high quality
(start - end)		264 (2 - 265)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no265_i10.b1 PHD_FILE: MSMg01no265_i10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:02 2005CHROMAT_FILE: MSMg01no265_i10.g1 PHD_FILE: MSMg01no265_i10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(28,827,453 - 28,827,716)(28,944,923 - 28,945,209)
sequence
CATTTTTCGGTCCAGGCGTCCTGGCCGCAGTAGAGCTGGATCCAAGGTGT
CTGCTCTGTTTGTGGCCATGATTACCTGGCACAGGGAGAAACCAGCTTAG
GCTTCTGCCATTCCTACATCTTCTTTTCCTGCCGTGACATCTGGCCTCCA
TGAGCCATCCCCTGTCTTTCTCCAGTCCTTAGGCCATACCACCCCTTGCC
AATCCTGAGCCCTAAACCTTCACATTGACGTTCTGGTCAAATCCATCCAT
TTGATTCAGTAGTTCCAGTATGATCCTCTGAACCTCCCTGTCAGCTAAGA
GTAAGATTTTTTTTTTTGCCCCCACCACCTCCTTGGACAAGCCTGCACAA
GATCCAGGCCATTTGGGCACTACTCAACTCAAGACTGGGCATCGAATCTC
TTGGTGGCAATGGCATCAATTTCATCTATGAAGATGATGGCAGGTGCATT
CTCCTTAGCTAGGCGGAACACATCCCGGACCATTCGGGGGCCCTCACCCA
GATACTTCTGAACAAACTCCGAGCCCACCACACGGATAAATGCAGCTGAG
GGCATAATGACTAGGATTTTACAATGTGGGGTTGTCCTCCCTCTGGGGAC
CTTTGTGTTTTACCTGCCTCTGAGATTTCCTGAAAATGTCCCCTTCTTGG
CTAATCCCCCGTAAAATCTGCCTAAAACACAAGATTGGTTTCCCCT

ACGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATTCTTTTGGCTGAATGGGATGC
ACAGGAAGATGAGGCAGACCCTCACTGGGTACCAGCTGTCCTGAGCATCA
GGATGCTGACTCAGCCATTCTGCAGGTGAAGGAGTTCAGAGAGGCAGGGT
AGTGGAGGATTGGCCACACAGCAAAACAGCAATTCCCACTTTCTGAGAGC
AGGTGTACTACCTTAAGTGGAAACATGTTTGCAGTGTGACTAATACTGTT
TAGATGGAGAATTTATCCTGATTATCTAGGTAGGAAATCCCATGGGCGTT
ATGCCATACAGAGATTTGATGATTTACCCCCCCCCCCCCGTGACCAAGGT
AAGGACTGACCGAGGCCACATACCGGGGTGGAAGAGACAAAGACTTGATT
GTCCTCTTAAGACAATCCAGTGTCCCCTTTCATCACTTTGATGTCAGTGC
AGTGAGTCTGGTCTTTGACTCCTGGCCTCCAGATCTGCTGGGAACTATGC
TCTTCCTTTTGACCTGCTGAGCCTGGGGTGATCAGTACAGCGGCCACTGT
CTGCAGCAGGTGGTGTCCTTTTGTGTCCCAGTCTTTTGAACTAAGCCCCA
TATCACAGGATCTTCTGTATGTCCCTTCCAGTTCCTCTTACCCCATTGTC
TTGTTTATTAGATTGCCTTTCCATTCCCTTCCGCTTCGCCGGTTATATAA
TTGGTCTTTTGCTAAAAACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_i10.b1 MSMg01no265_i10.b1 CHROMAT_FILE:
MSMg01no265_i10.b1 PHD_FILE: MSMg01no265_i10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:02 2005
         (264 letters)



>mm_chr7_28827253_28827916
          Length = 664

 Score =  495 bits (256), Expect = e-144
 Identities = 262/264 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttttcggtccaggcgtcctggccgcagtagagctggatccaaggtgtctgctctgttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttttcggtccaggcgtcctggccgcagtagagctggatccaaggtgtctgctctgttt 260

                                                                       
Query: 61  gtggccatgattacctggcacagggagaaaccagcttaggcttctgccattcctacatct 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 gtggccatgattacctggcacagggaggaaccagcttaggcttctgccattcctacatct 320

                                                                       
Query: 121 tcttttcctgccgtgacatctggcctccatgagccatcccctgtctttctccagtcctta 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttttcctgtcgtgacatctggcctccatgagccatcccctgtctttctccagtcctta 380

                                                                       
Query: 181 ggccataccaccccttgccaatcctgagccctaaaccttcacattgacgttctggtcaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggccataccaccccttgccaatcctgagccctaaaccttcacattgacgttctggtcaaa 440

                                   
Query: 241 tccatccatttgattcagtagttc 264
           ||||||||||||||||||||||||
Sbjct: 441 tccatccatttgattcagtagttc 464


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 664
Length adjustment: 9
Effective length of query: 255
Effective length of database: 655
Effective search space:   167025
Effective search space used:   167025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no265_i10.g1 MSMg01no265_i10.g1 CHROMAT_FILE:
MSMg01no265_i10.g1 PHD_FILE: MSMg01no265_i10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:02 2005
         (287 letters)



>mm_chr7_28944723_28945409
          Length = 687

 Score =  547 bits (283), Expect = e-160
 Identities = 286/287 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattcttttggctgaatgggatgcacaggaagatgaggcagaccctcactgggtaccagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 cattcttttggctgaatgggatgcacaggaagatgaggcagaccctcactgggtaccagc 428

                                                                       
Query: 61  tgtcctgagcatcaggatgctgactcagccattctgcaggtgaaggagttcagagaggca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tgtcctgagcatcaggatgctgactcagccattctgcaggtgaaggagttcagagaggca 368

                                                                       
Query: 121 gggtagtggaggattggccacacagcaaaacagcaattcccactttctgagagcaggtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gggtagtggaggattggccacacagcaaaacagcaattcccactttctgagagcaggtgt 308

                                                                       
Query: 181 actaccttaagtggaaacatgtttgcagtgtgactaatactgtttagatggagaatttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 actaccttaagtggaaacatgtttgcagtgtgactaatactgtttagatggagaatttat 248

                                                          
Query: 241 cctgattatctaggtaggaaatcccatgggcgttatgccatacagag 287
           |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 247 cctgattatctaggtaggaaatcccatgggtgttatgccatacagag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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