BAC Information

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BAC

Clone NameMSMg01-266F19
Chromosome7 (Build37)
Map Location 80,687,413 - 80,687,724
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042880, LOC233391, LOC665570, LOC100042029, EG384643, LOC625243, 4930429H19Rik, LOC665588, Rgma, Chd2
Downstream gene1810026B05Rik, EG665610, LOC244061, A830073O21Rik, St8sia2, LOC100042127, LOC100042140, LOC546979, Slco3a1, EG665308
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-266F19.T7 (MSMg01no266_f19.b1)MSMg01-266F19.TJ (MSMg01no266_f19.g1)
ACCAG407371AG407372
length768838
length of high quality
(start - end)
319 (45 - 363)51 (78 - 128)
definitionCHROMAT_FILE: MSMg01no266_f19.b1 PHD_FILE: MSMg01no266_f19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:08 2005CHROMAT_FILE: MSMg01no266_f19.g1 PHD_FILE: MSMg01no266_f19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCGTTTGCTGGAGTGTCATGGATTTGACCAGTAGGGTTCAGTAAAGGA
ATGTTTTTAGTTTTTTCGGCATTTGTATGTGGTTGGTTACTTGTGTGCAT
GGGAGAGAATACTTTGTTGCATTTGTAATTTTGTTTCTATAGACCTCGTG
CTTCCATCTGGAGGGGGTTTGTCTTTGACAGTTGATAATTGGCTGGTAGA
TGTGGCCTATTTAAGTGGCGGTGATTGATGAAATGTGAGTGTACTTAGAA
TTCGATTTCAAACATGAGTGATTTTTTTCTTTTGATTTTGGAGTTGAGAT
TGAGTGTTTGTTNNATAGGNTCCCNAGGCCGGAGCCCTTTTTTGTTTTTT
AAGTTATTATTTACCCCCCCCCCCAAAAAAAAAAAAAAAATGTTTGGTGG
GTGGCGCTTCCAATATTATTGCCTTACTCAGAAGCCCGTTTCTTTTGTTC
TCTCATACGGTTGTCCCCATTTTTGCTCTCCCGCCCATTAACACCACCTA
AGTTCTTTTCTCCTCACAAATTTCTTCTCTTTCCTTTCACCTTATCTCTT
ACATTTTTCTTTTATTTCTTACTTTGTCTTTACTCGCCCTCCCATTAACT
TCTCCCTCTCCACCCCCCCCTTTATATTCCTTCGCTTCTCCCTCTCTTTT
CTCCCATTTATAAACCCCCTACTTTCCTCTTTTTTTCCCCTCTTTTTTCC
CTACCCCCCTTTTTCCCT
ACGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTATAACTCTTTCAACTTCCGTGA
TGATTTGGGAGGGTGGTGGTGGGGGGGCNNNNNNNNNNNNNNNNNNNNNN
NNNNCNNGNNNNNNNNNNNNNNNNNNNNNNGNNNNGNNNNNNNNGNNNTN
NNGNGNNGNNNNNNNNNNNNGNNNNNNGNNNGGGGGNNGGNNGNGGGGGG
GGGGGGGGGGTTTTGTGGTNGTGNGNGTTNGNTGTTTGTTGTTNTTTGTT
TGNGGNNGNNGGTGTGGGTGGGGGGGGGNTTTTTTTTTTTTTNNTGTNGC
NTGTNNTGGGGNGNNGGNNNNNTTTTGNGGGTGGGNCCTCNAAGAACAGG
AGCCCATGTGTTTTTTTGTTTTNGATTTTTTTNGCCCCCCCCCCCCAAAN
NTNAAAANNAAAAAAGGTGGGGGGGGGGGGGGGNGTTTCCCTTCTTTTCT
TTTCCCTTCGCTCTTCTCTCCTCGGCCGGCGGTCCTTTTCTGCTCTGCTC
CCCGGCCGTTGCGGCTCTGGTTCGTGTTCTTTCTCTTTTTCGCGTGCTCT
CTTCCCGCTCCTTCCTCCTTTTTTTCTCCTGTTGCCCCCCTCGTCGCGCC
TTGTTGCGCCGTGTCCTTTTTTCCCCCTTTCCCTTTTTTTTTGCGCGCCC
CCCCTCCCCCCCTGGTNGCCGTGTTTGCTGTCCCCTTCTTTGTTGCTCCT
TTCTTCCGTTTTTTGTGTTCCCCGCGTGCCCTCTTCTTTTGTTTCTCCCC
GCCCGCTTTCTCCGTTTTTTGTTCTGCCCGCGCTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no266_f19.b1 MSMg01no266_f19.b1 CHROMAT_FILE:
MSMg01no266_f19.b1 PHD_FILE: MSMg01no266_f19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:08 2005
         (319 letters)



>mm_chr7_80687209_80687927
          Length = 719

 Score =  551 bits (285), Expect = e-161
 Identities = 305/317 (96%), Gaps = 10/317 (3%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcgtttgctggagtgtcatggatttgaccagtagggttcagtaaaggaatgttttt 64
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 516 gaattcgtttgctggagtgtcatggttttgaccagtagggttcagtaaaggaatgttttt 457

                                                                       
Query: 65  agttttttcggcatttgtatgtggttggttacttgtgtgcatgggagagaatactttgtt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 agttttttcggcatttgtatgtggttggttacttgtgtgcatgggagagaatactttgtt 397

                                                                       
Query: 125 gcatttgtaattttgtttctatagacctcgtgcttccatctggagggggtttgtctttga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gcatttgtaattttgtttctatagacctcgtgcttccatctggagggggtttgtctttga 337

                                                                       
Query: 185 cagttgataattggctggtagatgtggcctatttaagtggcggtgattgatgaaatgtga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 cagttgataattggctggtagatgtggcctatttaagtggcggtgattgatgaaatgtga 277

                                                                       
Query: 245 gtgtacttagaattcgatttcaaacatgagtga-----tttttttcttttgattttggag 299
           |||||||||||||||||||||||||||||||||          |||||||||||||||||
Sbjct: 276 gtgtacttagaattcgatttcaaacatgagtgaaaggg-----ttcttttgattttggag 222

                            
Query: 300 ttgagattgagtgtttg 316
           ||||| |||||||||||
Sbjct: 221 ttgaggttgagtgtttg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)