BAC Information

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BAC

Clone NameMSMg01-266H07
Chromosome7 (Build37)
Map Location 116,016,422 - 116,016,737
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr472, Olfr473, LOC669301, Olfr474, Olfr476, Olfr477, LOC626732, Olfr478, Olfr479, Olfr480, Olfr481, LOC100043059, Olfr482, Olfr483, Olfr484, Olfr485, Olfr486, Olfr487, Olfr1538-ps1, Olfr488, LOC546990, Olfr489-ps1, Olfr490, LOC626881, Olfr491, Olfr492, Olfr493, Olfr494, Olfr495, Olfr496-ps1, Olfr497, Olfr498, Olfr499-ps1, Olfr500-ps1, Olfr501-ps1, Olfr502, LOC269980, Olfr503, Olfr504, Olfr505-ps1, Olfr506, Olfr507, Olfr508, Olfr509, Olfr510, Olfr511-ps1, Olfr512, Olfr513, Olfr514, Olfr515-ps1, Olfr516, Olfr517
Downstream geneOlfr518, Olfr519, Nlrp10, Eif3s5, BC049265, Tub, Ric3, Lmo1, Stk33, EG668320, 1700095J03Rik, Trim66, Rpl27a, St5, LOC100042582, D930014E17Rik, BC051019, Ascl3, Tmem9b, 4930431P19Rik, Nrip3, Scube2, Phxr5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-266H07.T7 (MSMg01no266_h07.b1)MSMg01-266H07.TJ (MSMg01no266_h07.g1)
ACCAG407439AG407440
length736730
length of high quality
(start - end)		318 (46 - 363)289 (75 - 363)
definitionCHROMAT_FILE: MSMg01no266_h07.b1 PHD_FILE: MSMg01no266_h07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:14 2005CHROMAT_FILE: MSMg01no266_h07.g1 PHD_FILE: MSMg01no266_h07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGTAAATGAAAACTTTGCCTTTCAAGACAAGTAGTTCATTTCACA
CTTGACACAGATCAGAATGAACTCATATCTGAGTGTCATCCAGTCTCATT
GTTTCAGGAAGGGAAAGCTTTCTTGGAAAAGAAACCTCTTACCAAAAGAG
GTAACTGGAGAGATGGTTCAGTAGTTAAGAGCACTGGCTACTCTTTCAGA
TGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCAA
TAATAGGATCCGGTGCCCTCTTCTGGTGTGTCTGAAGAGAAACAGTACTT
ATATACATAAACTATTTAATATTTTCTCTCACCAAAGAAGTTCTTTTTTA
CAGAGAAAGTGACAGAATCACAGAAGTTTAGTTCAATGCCAGTGAAATCA
GTCAAGGATTTATGTCTGAGCTCAATTGTAATATTATTTTTCCTATAGCA
TTTCAGTGATTCCATTATCTTCTAGAATGGGTGAAAGTTCTGGGTGTACA
GACATGGACATGCAGACTTCCTACCCAGCATCTCATATCTACCTGCATTG
CTTCCCACCATTGCATAGACTGCCCATTCTATCAAACCACATCCTCTTCC
TCTAGCCCACACTTACTCCCCTTTCTTCCGTGTTCTGCTTCTGATTATCA
TTTCCTAAAGGGAGATGTCATGGTGAAGTCAAGTCT

TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTGTTTAGCTCTGTACCCCATTTTT
AATTGGGTTATTTGGAGTTTTTTATATATTTTTATTAGGTATTTTCCTCA
TTTACATTTCCAATGCTATCCCAAAAGTTCCCCATACCCTCCCCCCCACT
CCCCTACTCACCCACTACCACTTTTTGGCCCTGGCATTCCCTTGTACTGG
GGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCTG
ACTAGGCCAACTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCGGGGT
ACTGGTTAGTTCTTAATGTTGCCCCACCCACTAGGGTTGCAGATCCCTTT
AGCTCCTTGGGTACTTTCCCCGGATTTTTGGAGTCAACTTCTAGAGTTCT
TTATGTATTTTGGATTATGTATTAGCCCTCTGTTGGGTGTAGGGTTCATG
AAGATCTTTTTCCAACCTGTAAGCTGCCATTTTGTTCTACTGACAGTATC
CTTTGCCTTACAGAAGTTCTTCAGTTTCTGGAGGTCCCATTTATCCATTA
GTGATCTTAGAACTTAAGCCACTGGCGTTCTGCTCAAGAAATTTTTCCCC
ATTGCCAACTCATTCGAGGTTATTTCCAACTTTCTTCTTCTATTCAATTT
AGCGTATCTGGTTTTATGTGCACATTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no266_h07.b1 MSMg01no266_h07.b1 CHROMAT_FILE:
MSMg01no266_h07.b1 PHD_FILE: MSMg01no266_h07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:14 2005
         (318 letters)



>mm_chr7_116016379_116017096
          Length = 718

 Score =  569 bits (294), Expect = e-166
 Identities = 310/316 (98%), Gaps = 2/316 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtaaatgaaaactttgcctttcaagacaagtagttcatttcacacttgacaca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 gaattctgtaaatgaaaactttgcctttcaagacaagtagttcatttcacacttgacaca 300

                                                                       
Query: 65  gatcagaatgaactcatatctgagtgtcatccagtctcattgtttcaggaagggaaagct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 gatcagaatgaactcatatctgagtgtcatccagtctcattgtttcaggaagggaaagct 240

                                                                       
Query: 125 ttcttggaaaagaaacctcttaccaaaagaggtaactggagagatggttcagtagttaag 184
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 ttcttggaaaagaaaccttttaccaaaagaggtaactggagagatggttcagtagttaag 180

                                                                       
Query: 185 agcactggctactctttcagatggtcctgagttcaattcccagcaaccacatggtggctc 244
           |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 179 agcactggctactctttcagatggtccttagttcaattcccaggaaccacatggtggctc 120

                                                                       
Query: 245 acaaccatcaataataggatccggtgccctcttctggtgtgtctga--agagaaacagta 302
           ||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 119 acaaccatccataataggatccggtgccctcttctggtgtgtctgaagagagaaacagta 60

                           
Query: 303 cttatatacataaact 318
           ||||||||||||||||
Sbjct: 59  cttatatacataaact 44


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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