BAC Information

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BAC

Clone NameMSMg01-267G21
Chromosome7 (Build37)
Map Location 34,895,476 - 34,896,005
singlet/doubletsinglet
Overlap geneWtip
Upstream geneEG668419, EG668422, EG546954, LOC100043856, LOC100043857, EG545947, EG434676, EG668431, Abpd, EG545948, LOC435963, LOC435962, EG626970, LOC100043859, LOC627004, LOC100043398, LOC100043401, Scgb2b1, LOC668440, Abpz, LOC100043860, LOC627079, LOC635803, Abpg, LOC100043864, LOC100043865, Abpb, Abpa, LOC100043866, LOC100043867, LOC100043868
Downstream geneSae2, LOC100043410, Pdcd2l, Gpi1, 4931406P16Rik, EG619734, Lsm14a, LOC668460, LOC668464, Kctd15, Chst8, Pepd, Cebpg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-267G21.T7 (MSMg01no267_g21.b1)MSMg01-267G21.TJ (MSMg01no267_g21.g1)
ACCAG408153AG408154
length730725
length of high quality
(start - end)
---537 (72 - 608)
definitionCHROMAT_FILE: MSMg01no267_g21.b1 PHD_FILE: MSMg01no267_g21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:30 2005CHROMAT_FILE: MSMg01no267_g21.g1 PHD_FILE: MSMg01no267_g21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCCGCTAAACGACTACTANATGCCGACCCGCCGNGGAANNCAGNNAC
TTTACCAAAGAAGGGAANAAAGAANGAAGCCANNNAGGGAAAGGNCGCNG
AGGANATATTTACCGGAGGAANNAGGNNNNNNGNANNNAAANNNNAGGGA
NNAGNNNNAGGGGNNANGGNNANNAGAANNAAGGNAGAAGAGGNNNNNNA
GNANGAGAGNNANANAGNANGAAAANAAGGNNNNNANNNAATTTTTTTTN
NTTTNTTTTTNNTTNNTTNNTNTNTNTNTGGNATNNTTTTTTNNNTNNTT
NNNTNNNTTTTTTTTTTTGTNAAGAAGGNNNNNNGGGGGAGNGGGNAAAA
NTTTTTTTTTCTCAGAACAGAACCCCCAGAGNAGGNGNGNNNNANGGNNG
AGNNACACNNGAAAACNCNAAAGNNNNAAGGCGGNNACGGNAGGGACAGN
ANCNNACNCNGGNNNAAAAAAAAAACAAACAGGACGGGAGAGACGGCNCA
GAGGCNAAGAGCGCCGACCGGCCCNCCAGAGGCCCGGAGNNCAACNCCCA
GCAACCACAGGGNAGCCCACAACCACCCGAAAAGGGAACCGACGACCACC
ACCGGGGNGGCNGGAAACAGCNAAAGGGNACCCACACAGGAAACAAATTT
TTTTTTTTATGGTCAACAAATAACTAAGACCAGGGAAAGAACCCTTGATA
TAATTTTATCACGGCTTCTGAGATGAATTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCACTGTATTGGAGGAGCCTAGCTGACCTC
CAATTCACAGAGATCCACTTACCTCTGCCTCTGCCTCCTGAGTGCTGGGA
TTAAAGGTGGCACCACATTGTCCAGCTTCACAAGCTATGGTTTTTAACAA
CAAGGTGTGTGGGGGTACGTGGTTGCTGGAACCTTAGCTCAGCACTAAGA
ACTTGCTCCACAACCATGAACACAATAGCTCATGGCTTTTACTCATAGAA
CAATCCAGACTCTCACCAGCTCCAGATCTGACTCTGTTCTCCACACAGAG
GCATGGATACTTTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCCCACCCTCTCT
CTCTCTCACACACACACACACACACACCTTTAAACTCTTTTTTTATTANG
AAAAAATGAACAAAGCAACAGCTAACAGGTGTGGTAGCACATCTGTAATC
CCAGCACTTCAGTGGCAGAAACAGAAGCAGAAATTCGAGTTCCACGGCTG
GAGAGATGGCTCAGTGGTTAAGAACACTGACTGTTCTTCCAGAGGTCCTG
AGTTCAAATCCCAGCAATCACATGGTGGCTCACAATCATGTGTAATGGGA
TCTGATGCCCTCTTCTGGTGTCTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no267_g21.g1 MSMg01no267_g21.g1 CHROMAT_FILE:
MSMg01no267_g21.g1 PHD_FILE: MSMg01no267_g21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:30 2005
         (537 letters)



>mm_chr7_34895276_34896209
          Length = 934

 Score =  837 bits (433), Expect = 0.0
 Identities = 510/538 (94%), Gaps = 9/538 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactgtattggaggagcctagctgacctccaattcacagagatccacttacctctgcctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cactgtattggaggagcctagctgacctccaattcacagagatccacttacctctgcctc 260

                                                                       
Query: 61  tgcctcctgagtgctgggattaaaggtggcaccacattgtccagcttcacaagctatggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcctcctgagtgctgggattaaaggtggcaccacattgtccagcttcacaagctatggt 320

                                                                       
Query: 121 ttttaacaacaaggtgtgtgggggtacgtggttgctggaaccttagctcagcactaagaa 180
           ||||   ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 tttt---aacaaggtgtgtgggggtaggtggttgctggaaccttagctcagcactaagaa 377

                                                                       
Query: 181 cttgctccacaaccatgaacacaatagctcatggcttttactcatagaacaatccagact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 cttgctccacaaccatgaacacaatagctcatggcttttactcatagaacaatccagact 437

                                                                       
Query: 241 ctcaccagctccagatctgactctgttctccacacagaggcatggatactttctctctct 300
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 438 ctcaccagctccagatctgactctgttctctacacagaggcatggatactttctctctct 497

                                                                       
Query: 301 ctctctctctctctttctctctctctctctctctctctctctctctctctctctctctct 360
           ||||||||||||||  |||||| |||||||||||||| ||| | | | ||||||||||||
Sbjct: 498 ctctctctctctct--ctctctgtctctctctctctc-ctccccccc-ctctctctctct 553

                                                                       
Query: 361 ctctccccc-caccctctctctctctcacacacacacacacacacacctttaaactcttt 419
           | | | | | ||| | | | | | | ||||||||||||||||||||||||||||||||||
Sbjct: 554 cacacacacacacacacacacacacacacacacacacacacacacacctttaaactcttt 613

                                                                       
Query: 420 ttttattangaaaaaatgaacaaagcaacagctaacaggtgtggtagcacatctgtaatc 479
           ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 ttt-attaggaaaaaatgaacaaagcaacagctaacaggtgtggtagcacatctgtaatc 672

                                                                     
Query: 480 ccagcacttcagtggcagaaacagaagcagaaattcgagttccacggctggagagatg 537
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 673 ccagcacttcagtggcagaaacagaagcagaaatttgagttccacggctggagagatg 730


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 101
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 934
Length adjustment: 10
Effective length of query: 527
Effective length of database: 924
Effective search space:   486948
Effective search space used:   486948
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)