BAC Information

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BAC

Clone NameMSMg01-268P11
Chromosome7 (Build37)
Map Location 146,920,392 - 146,921,052
singlet/doubletsinglet
Overlap genenone
Upstream geneMapk1ip1, Ppp2r2d, Bnip3, EG668784, LOC669185, 6330417G02Rik, Dpysl4, Stk32c, LOC100038956, Lrrc27, Pwwp2, Inpp5a, Nkx6-2, E030019B06Rik, 9330101J02Rik, LOC100043472, EG434253
Downstream geneEG664869, Gpr123, LOC244229, Kndc1, Utf1, LOC100039095, 6430531B16Rik, Adam8, Tubgcp2, Zfp511, Msx3, Drd1ip, Prap1, 1810014F10Rik, Echs1, Paox, Mtg1, Sprn, Olfr522, Olfr523, Olfr524, E430002D04Rik, 5830411N06Rik, EG622335, Olfr525, Olfr527, GA_x5J8B7W72BC-152913-152037, Olfr60, GA_x5J8B7W72BC-125691-125311, Olfr530, LOC622973, Olfr531, Olfr532, Olfr533, Olfr534-ps1, Olfr535, Olfr536, Olfr537-ps1, Olfr1523-ps1, Olfr538, Olfr1553-ps1, Olfr46, Olfr61, Olfr53, Olfr539, GA_x5J8B7W3EKE-4574231-4574913, Olfr45, Olfr541, GA_x5J8B7W3EKE-4522784-4521912
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268P11.T7 (MSMg01no268_p11.b1)MSMg01-268P11.TJ (MSMg01no268_p11.g1)
ACCAG409228AG409229
length729729
length of high quality
(start - end)
665 (45 - 709)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no268_p11.b1 PHD_FILE: MSMg01no268_p11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:20 2005CHROMAT_FILE: MSMg01no268_p11.g1 PHD_FILE: MSMg01no268_p11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGCATCTGAACTTCGAAGATGCAAAAGGCCAGATGTAAGAGATGAG
ATCAGCATGACCCTGGAAGGGCCCATCAGAGCTACTTCACCGCCCCAGCT
GTCCCCCCTCTACCTACACCCTGGGCTCTCACCTCAACTCCACAGTTTCC
CTGTGATCAGACCCAGTGGCAGCTCATCCTTTGCTTTATACCCCAAAGAT
TCAGATCAGATGGGGGCAGGAAGGGAGTCACTGTAAAGTTACAGCATACT
TCTGTACAAGATGGGGCCCTGTCACTCTGAGTGACACTCAAAGTGTCCTC
ACACTGCCCTGATGTATCCCAGGCAGATGCTATTCTCTTCAGCATTGTCC
TCCACACTGGAGAGATCCTCCATCTATGTAAACTCTATTTGAAAAGAGCA
ATTTAAAAATCCCATTGCTGGCTGCGAGGCATAGTTGTTGTCTGATCTGG
GTGAATATTGATTGGCACAGTGGCCATGGAATGGTGGAACATAGAGTCAG
GTGATCTAAGGACCAGAGAAAGGGAATGAGAGGAAAAATAAAAATGAGGC
TTGGGCAAGGTGGATGCAGGCCACTGCCAGGGTTCTAAACTGTGCCCTTT
GAGGTGCTGAGTGTGCGATTCTCTGAGGCTGGCATACCGATGTCTGAAGC
TCACAAGGAGGAGAATGGTGGCACTCAGN
TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTTTAGAGCCGTACCCCATTT
AGTTGGATTATTTGGTTTGTTGATGTCTAGTTTCCTTGAGTTCTTTATTT
ATTTTTGATATTAGCCCTCTGATGTTGACTTCTTTTTAATTCACAGAGTC
CATTTATTACTCTTAGCACGTGCACTGGTGTAGAACCATCTACCAGGGTG
TGGGTAGCCTCCCAGAGGTGACAGCCCTGAAGAAAACTTCCTCCTTCTCC
CAGAAGCCATCAGTTGCCAGTATCTTCCCAGCTAGGCCTGAGACCTTCTG
ATCTCCTCACTTCTTGTTGAGATTCGCGTCCGGCTTGATCTTGTTTGGGT
CTGGTGCAGGCTGACACACCCACAGACAGTTCATATGTGCGACAGCCCAA
AAGACACTGCTTCTTGTAGCCACCTACTGTCTCTGGTTCTTACACTCTTT
CCATGCCCACTTCTGCGACGGTCCTGAACTGTGGGAAGATGGGGTATGAT
ACAGATGTCTCATTTAAGGTTGAGCAGTTGTGGGGCTCTGTGTTAATCAT
CTACCTCAAGGTATTTCTCTCAGAAGGTCATCTGCGAGGATGCTACGTCT
TTAGGTGCCAGTTTATTGCTCGTTCTACTCAGAAGAATAGCAACCGTAGG
TTCTCTCTTAGAGCTATCACCTACCCAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_p11.b1 MSMg01no268_p11.b1 CHROMAT_FILE:
MSMg01no268_p11.b1 PHD_FILE: MSMg01no268_p11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:20 2005
         (665 letters)



>mm_chr7_146920188_146921252
          Length = 1065

 Score = 1201 bits (621), Expect = 0.0
 Identities = 651/661 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagcatctgaacttcgaagatgcaaaaggccagatgtaagagatgagatcagcat 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 gaattcagcatctgaatttcgaagatgcaaaaggccagatgtaagagatgagatcagcat 806

                                                                       
Query: 65  gaccctggaagggcccatcagagctacttcaccgccccagctgtcccccctctacctaca 124
           |||||||||||||   |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 805 gaccctggaagggggtatcagagccacttcaccgccccagctgtcccccctctacctaca 746

                                                                       
Query: 125 ccctgggctctcacctcaactccacagtttccctgtgatcagacccagtggcagctcatc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ccctgggctctcacctcaactccacagtttccctgtgatcagacccagtggcagctcatc 686

                                                                       
Query: 185 ctttgctttataccccaaagattcagatcagatgggggcaggaagggagtcactgtaaag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctttgctttataccccaaagattcagatcagatgggggcaggaagggagtcactgtaaag 626

                                                                       
Query: 245 ttacagcatacttctgtacaagatggggccctgtcactctgagtgacactcaaagtgtcc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttacagcatacttctgtacaagatggggccctgtcactctgagtgacactcaaagtgtcc 566

                                                                       
Query: 305 tcacactgccctgatgtatcccaggcagatgctattctcttcagcattgtcctccacact 364
           |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcacactgtcctgatggatcccaggcagatgctattctcttcagcattgtcctccacact 506

                                                                       
Query: 365 ggagagatcctccatctatgtaaactctatttgaaaagagcaatttaaaaatcccattgc 424
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggagagatcctctatctatgtaaactctatttgaaaagagcaatttaaaaatcccattgc 446

                                                                       
Query: 425 tggctgcgaggcatagttgttgtctgatctgggtgaatattgattggcacagtggccatg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tggctgcgaggcatagttgttgtctgatctgggtgaatattgattggcacagtggccatg 386

                                                                       
Query: 485 gaatggtggaacatagagtcaggtgatctaaggaccagagaaagggaatgagaggaaaaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaatggtggaacatagagtcaggtgatctaaggaccagagaaagggaatgagaggaaaaa 326

                                                                       
Query: 545 taaaaatgaggcttgggcaaggtggatgcaggccactgccagggttctaaactgtgccct 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taaaaatgaggcttgggcaaggtggatgcaggccactgccagggttctaaactgtgccct 266

                                                                       
Query: 605 ttgaggtgctgagtgtgcgattctctgaggctggcataccgatgtctgaagctcacaagg 664
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 265 ttggggtgctgagtgtgcgattctctgaggctggcataccgatgtctgaagctcataagg 206

            
Query: 665 a 665
           |
Sbjct: 205 a 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space:   691025
Effective search space used:   691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)