BAC Information

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BAC

Clone NameMSMg01-269A14
Chromosome7 (Build37)
Map Location 28,571,481 - 28,713,685
singlet/doubletdoublet
Overlap geneLOC100043233, 4933426I21Rik, Zfp59, 4732475C15Rik, Prkcz2, 1700049G17Rik
Upstream geneCyp2g1, LOC100043745, Cyp2a5, EG233005, EG330491, Cyp2a12, LOC100043199, Cyp2f2, Gm1450, Egln2, Rab4b, Mia1, Snrpa, Itpkc, Adck4, Numbl, Ltbp4, Shkbp1, Spnb4, Blvrb, EG668045, Sertad3, Sertad1, Prx, Hipk4, Pld3, 2310022A10Rik, Akt2, Ttc9b, Map3k10, C030039L03Rik, Zfp60, LOC100043229
Downstream geneEG668175, LOC100043771, Zfp780b, C130069I09Rik, LOC100043772, Psmc4, LOC100043774, 9530053A07Rik, Fbl, Dyrk1b, Eid2, LOC434156, BC089491, Dll3, Timm50, Supt5h, Rps16, Plekhg2, Zfp36, Ixl, Paf1, Samd4b, 1700085B13Rik, Gmfg, Lrfn1, LOC624672, 1700028B04Rik, EG330496, Il28, Sycn, 1190020J12Rik, Pak4, C330005M16Rik, Fbxo27, Fbxo17, Mrps12, Sars2, EG624918, Nfkbib, Sirt2, 5830482F20Rik, Hnrpl, Ech1, Lgals4, Lgals7, Capn12, Actn4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-269A14.T7 (MSMg01no269_a14.b1)MSMg01-269A14.TJ (MSMg01no269_a14.g1)
ACCAG409276AG409277
length720720
length of high quality
(start - end)		507 (129 - 635)292 (380 - 671)
definitionCHROMAT_FILE: MSMg01no269_a14.b1 PHD_FILE: MSMg01no269_a14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:25 2005CHROMAT_FILE: MSMg01no269_a14.g1 PHD_FILE: MSMg01no269_a14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,571,481 - 28,571,987)(28,713,394 - 28,713,685)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTAAGTTTATTCTGTTGAACTTGCCCTGAGATTTCTAACTCTTATCCAG
TAAACTGCTATGCCTGTTTCCCTTCAATATCTCTCTATCAGCACTGGAGG
CATTTCATCTAAATAGTAACATTCTTAAGAAATCCAAAGCCCAAAGTCGG
CTCAACGATTGCCTAGGATATTGGGACACTGGTGGAGGCCAGGAAGCAAT
GTTCAATCTAACTTAGCTATTTGTTAAATCATTCCTTTGAGGTACTTATA
ATAAAACAATACTGAAAGAAAGCATGCTAAAACCTTCACCGATTATTGCA
AGGACAAATCTGGACCACATCTATGTTATGTGAAGCCAAAGACTCCAGGA
GACCAGTTTTCCATGAAACTTTTTGTCTCAGGACTGTGGCCAAACTTTTG
GACTTGTCACAGAGACTCCACTGGAGTGGGTGTGGCAGCTTGTTGCTTTC
TAAGTTGTTTCATTTCCCCCATGATTTGCTTGTTGAACTTAAAAAGGAAC
TTCCTAGAGAAGTTGTCTAGTTCTAGGAAAAACAAAAATCACCAAAACCG
TGATCATTCCCTAAGTCCCCTTTCTCCATTGCTGGGGTAAGGGCCACTTG
ATCATCTCCTCCTCTCCTTCCTCCTCCAGNTGATTTCCACCTTGTTCCTT
CTTCTGTTCCACTCCTCCAT

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCATGACTTTCTCAGAGCCCTAGCTGTGT
GAGTGTTGAGGGAACTTTTAGCCCAGTGCTCAGTGCGGATGCTGCCAGAG
CATGATGGGGATCTCATCCTTGCACAGGCTCCCCGCGAAGGCCATCAGTC
AAAAGGAGGGCTTGAGAAGGATGGGATCATTATTGCTGCCCATCTAAGAG
TCAAGGATGAGTGTACTCTTCTTTTCTGTTTGAGAAATGAGTTTTCAATT
TTATAATATGGAATTGTCAGTAAATGCAGGTAGGTGAACGTACACATTCA
TACCTCCACCGCTGTGTTCCTTACGCTGTCCCTGCCCTTAGGTCCTGGTG
TTCACATGACCATTTCAATTACCCTTGACTTTTTCTCCCTAAATCACTTC
CTTTCCCCACATTATAGACAGTGCTCATCTTGGGTTCATTGTCTGCAGGG
TATGGCAGGACAAGGGAGTGTTAGAAAGAATGCAAATACTGGTTGTATAT
TTAAGGAAATGACTCATAAGCTCTAGTCTGTACAGTGTACATTTTAATCT
CAGCATTTTGGGAGGCAGAAGCAGGAGGATCATTGTAAATTAAGGATCAG
TTTGATCCACATAGCAAGTTCCAGGAGGGGTGTGCTACAAAATGAGAACC
TGTTTCAAAACAAGGAGGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no269_a14.b1 MSMg01no269_a14.b1 CHROMAT_FILE:
MSMg01no269_a14.b1 PHD_FILE: MSMg01no269_a14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:25 2005
         (507 letters)



>mm_chr7_28571281_28572187
          Length = 907

 Score =  980 bits (507), Expect = 0.0
 Identities = 507/507 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atctctctatcagcactggaggcatttcatctaaatagtaacattcttaagaaatccaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atctctctatcagcactggaggcatttcatctaaatagtaacattcttaagaaatccaaa 260

                                                                       
Query: 61  gcccaaagtcggctcaacgattgcctaggatattgggacactggtggaggccaggaagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcccaaagtcggctcaacgattgcctaggatattgggacactggtggaggccaggaagca 320

                                                                       
Query: 121 atgttcaatctaacttagctatttgttaaatcattcctttgaggtacttataataaaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgttcaatctaacttagctatttgttaaatcattcctttgaggtacttataataaaaca 380

                                                                       
Query: 181 atactgaaagaaagcatgctaaaaccttcaccgattattgcaaggacaaatctggaccac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atactgaaagaaagcatgctaaaaccttcaccgattattgcaaggacaaatctggaccac 440

                                                                       
Query: 241 atctatgttatgtgaagccaaagactccaggagaccagttttccatgaaactttttgtct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atctatgttatgtgaagccaaagactccaggagaccagttttccatgaaactttttgtct 500

                                                                       
Query: 301 caggactgtggccaaacttttggacttgtcacagagactccactggagtgggtgtggcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caggactgtggccaaacttttggacttgtcacagagactccactggagtgggtgtggcag 560

                                                                       
Query: 361 cttgttgctttctaagttgtttcatttcccccatgatttgcttgttgaacttaaaaagga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttgttgctttctaagttgtttcatttcccccatgatttgcttgttgaacttaaaaagga 620

                                                                       
Query: 421 acttcctagagaagttgtctagttctaggaaaaacaaaaatcaccaaaaccgtgatcatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acttcctagagaagttgtctagttctaggaaaaacaaaaatcaccaaaaccgtgatcatt 680

                                      
Query: 481 ccctaagtcccctttctccattgctgg 507
           |||||||||||||||||||||||||||
Sbjct: 681 ccctaagtcccctttctccattgctgg 707


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space:   445809
Effective search space used:   445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no269_a14.g1 MSMg01no269_a14.g1 CHROMAT_FILE:
MSMg01no269_a14.g1 PHD_FILE: MSMg01no269_a14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:25 2005
         (292 letters)



>mm_chr7_28713271_28713962
          Length = 692

 Score =  565 bits (292), Expect = e-165
 Identities = 292/292 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccctgcccttaggtcctggtgttcacatgaccatttcaattacccttgactttttctccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 ccctgcccttaggtcctggtgttcacatgaccatttcaattacccttgactttttctccc 356

                                                                       
Query: 61  taaatcacttcctttccccacattatagacagtgctcatcttgggttcattgtctgcagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 taaatcacttcctttccccacattatagacagtgctcatcttgggttcattgtctgcagg 296

                                                                       
Query: 121 gtatggcaggacaagggagtgttagaaagaatgcaaatactggttgtatatttaaggaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 gtatggcaggacaagggagtgttagaaagaatgcaaatactggttgtatatttaaggaaa 236

                                                                       
Query: 181 tgactcataagctctagtctgtacagtgtacattttaatctcagcattttgggaggcaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 tgactcataagctctagtctgtacagtgtacattttaatctcagcattttgggaggcaga 176

                                                               
Query: 241 agcaggaggatcattgtaaattaaggatcagtttgatccacatagcaagttc 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 agcaggaggatcattgtaaattaaggatcagtttgatccacatagcaagttc 124


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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