BAC Information

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BAC

Clone NameMSMg01-269H14
Chromosome7 (Build37)
Map Location 24,311,365 - 24,311,657
singlet/doubletsinglet
Overlap geneLOC667651
Upstream geneEG667512, LOC100043061, LOC100043638, LOC667527, EG667530, LOC667536, EG667543, LOC100043645, EG667551, LOC100043650, LOC100043067, LOC100043069, LOC670857, LOC620758, EG667570, LOC100043658, LOC100043079, LOC100043083, EG667586, EG667599, LOC100043086, LOC100043665, LOC667616, LOC100043667, LOC667623, LOC100043088, EG628664, Nlrp4e, LOC434261, Nlrp5, LOC100043095, EG622032
Downstream geneLOC100043101, LOC100043103, EG546944, V1rd7, V1rd9, EG545934, V1rd22, LOC384573, EG622222, LOC546943, V1rd12, V1rd13, V1rd17, LOC100043121, V1rd16, LOC384575, V1rd20, V1rd18, V1rd15, EG622446, Zfp180, Zfp112, Zfp235, Zfp114, Zfp111, Zfp109, Zfp108, Zfp93, LOC100043690, Zfp61, LOC100043691, Zfp94, 1700008P20Rik, Lypd5, Kcnn4, 1500002O20Rik, Irgc1, Plaur, Cadm4, Zfp428
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-269H14.T7 (MSMg01no269_h14.b1)MSMg01-269H14.TJ (MSMg01no269_h14.g1)
ACCAG409579AG409580
length722728
length of high quality
(start - end)
667 (43 - 709)293 (75 - 367)
definitionCHROMAT_FILE: MSMg01no269_h14.b1 PHD_FILE: MSMg01no269_h14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:57 2005CHROMAT_FILE: MSMg01no269_h14.g1 PHD_FILE: MSMg01no269_h14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:57 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCTGAATAACCATTATGAGAAAATGAACCTAAGGGATGCCAGTAAGTT
CATGTTGTATTGGCCATCTACTGATTTGCATGGGGCCTACCCATAAGAAT
GACTTGTTTCCCCCTGGGAGATCCCCCTTGCAAAAAAAAAAAGTTCTTTT
TCTTTTTAAATAACATGCGGTTATCATCTAGATTCTAGGTCAATGTTGAG
TGCATGTGTCCATGTCTTTAAGCTCTAGGATCTCATCATGTACAGAACCA
TGAAGGTCTAGTGCATAAACTCTCATTTTCTTGGAGTGTATATGTGCATG
CTGTGCTTATATGATCTTACTTCTTTTGTGCCCTCCTTCCCCTTTGGCTC
TTATACTTCCTACGCTTCCAATCCAAAAGTCTTCTATAACTCCTGAAGAA
AGGGATTTGATGAAGGCATCCCATCTAGGACTGAGTGTTCAAAAGTATCT
CACTCTACATATTTTATGGCTATATATGTCATTGTTAGTCCCTATCTGCT
GGAAAAGGAATCTTCTGATGATGGCCAAACAAGGTGCTGATTTATGAGTG
TAGCAGAATATGATTAGAAGTCAATTTCTTGGTATATTTCTTTAGCAGTA
CACTAGTATTTCGTGTTGCCCTGTGGCCCTGAACTACTTTATCTCAGGTT
CTTCTTCACCACCCAGTTTCAG
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGTACATACTTCAGCATATGTAGTT
GAAGAGGAAATAAAGGAACGGCAATGAAGAAAGCAAGAGTCTCTGAGACA
TTTTCAGAGACAAGTCAGACACCGGGTCAATCAGTGGGTTACGCTGAGGA
AAAAGCAACAACTTCACAAGTCTTACAAAGCAGCAGAAAAGGAAGGCTCT
ATAGCCATGCAGTATTCAGATTTGGCACATTTAACTTCTAAAAGGACAAG
TGTTTTCCCTAGCAATTTGAATGTTTCTGTTGGAAGGTTTAGGTTACCCA
CTTCCCAGGTGCTTGGTGATGCAACAGAAGATGGAGAGAATCAGAATCAG
TTGTTTCAAGAACAAGCTCAAGCTCTTCATCAACTTTGAAACAGGCAAGT
CACCAGCTGGCTTCCTTTAAAACTGTGAGTGAAAGAAATACATCAGTGCT
TCCAAATGGTGGAAGGAAAAGTTGTCCCACCCAAGAGGGCTTTGGCTGTG
GGAAAATTTTATTTGTTGCCATAAGTGAGGAGAGAGAGAATTTTTTTGTG
AGCTGCCAGCATGATTTCCTTTCTGAAGACAAAGAANAGGCTTTCAGCAA
AATTCAGAAAGTAAAATTCAAAAATCCCTTATCTGGAGGCTTTGCCAGAC
CACCTGGAGGAGCCATCTTGGTTCCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no269_h14.g1 MSMg01no269_h14.g1 CHROMAT_FILE:
MSMg01no269_h14.g1 PHD_FILE: MSMg01no269_h14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:57 2005
         (293 letters)



>mm_chr7_24311165_24311857
          Length = 693

 Score =  543 bits (281), Expect = e-159
 Identities = 290/293 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtacatacttcagcatatgtagttgaagaggaaataaaggaacggcaatgaagaaagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtacatacttcagcatatgtagttgaagaggaaataaaggaacggcaatgaagaaagc 260

                                                                       
Query: 61  aagagtctctgagacattttcagagacaagtcagacaccgggtcaatcagtgggttacgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 aagagtctctgagacattttcagagacaagtcagacaccgggtcaatcagtgggttatgc 320

                                                                       
Query: 121 tgaggaaaaagcaacaacttcacaagtcttacaaagcagcagaaaaggaaggctctatag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaggaaaaagcaacaacttcacaagtcttacaaagcagcagaaaaggaaggctctatag 380

                                                                       
Query: 181 ccatgcagtattcagatttggcacatttaacttctaaaaggacaagtgttttccctagca 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 ccatgcagtattcagatttggcacatttaacttctaaaaggacaagtgttttccctggca 440

                                                                
Query: 241 atttgaatgtttctgttggaaggtttaggttacccacttcccaggtgcttggt 293
           |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 atttgaatgtttctgttggaaggtttaggttatccacttcccaggtgcttggt 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)