BAC Information

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BAC

Clone NameMSMg01-269I18
Chromosome7 (Build37)
Map Location 47,079,318 - 47,257,864
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100038955, LOC100038967, LOC620018, LOC100038914, EG668531, EG628058, EG668618, EG330513, EG434168, 9430025M13Rik, LOC100038985, 3000002G13Rik, EG215208, LOC100039133, LOC100039050, EG668540, 4930558N11Rik
Downstream geneEG628161, LOC100039094, 2900093B09Rik, 4930433I11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-269I18.T7 (MSMg01no269_i18.b1)MSMg01-269I18.TJ (MSMg01no269_i18.g1)
ACCAG409633AG409634
length706706
length of high quality
(start - end)		588 (47 - 634)630 (77 - 706)
definitionCHROMAT_FILE: MSMg01no269_i18.b1 PHD_FILE: MSMg01no269_i18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:02 2005CHROMAT_FILE: MSMg01no269_i18.g1 PHD_FILE: MSMg01no269_i18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,079,318 - 47,079,901)(47,257,320 - 47,257,864)
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTACATTGCCACATTTAATTAAAGTTTTTTATTGCTCATATTGG
GTGGAAAGCTGGAAAAGTTTATTAGTCATCCTATAGAGAAAGTGATGACA
GTACTTTGAAAATAGCATTTATGGGACTTTATTTATATTTTATGCAAAAC
AAAGTAGCCAGTATAATTAGACAGTAATTTGTAACTTCCAACGTAAACAT
TTTGGAGCAGAGGTAGTGTAAGCCAGCGCTAATTAGAGAGCTGTTAGAGA
AAATATATATGTGGTAACAGATTGACATGATCCACCAAACAGCAGGCTAT
TTTTAAGTCCATGCTGCTTTTAAATTCTATTTTGTTTAGTAGTCTTGGGA
CAACTTTTAAGAGGAGAGTCTCATGACTTTACTTGCAGTTTCTTTAACTC
CAATCAAACTTTGCAACGTGAGCTCGCCATGGCAAAGCCCATTAACAGGA
CTTTTTTGTCTTTGTTGTCCCACAGCTCCAGAGAGAATGATAATCCTGAG
CACCATTTAACAATTGTGCTTTTGACAATGAAAAGCATGTTAGCCAGCAG
CTTGTCAGGGATACTTGGACATGGTCATTAATTCAAACAATGAAAGGTAG
GAAAGCTTCCAGAGGAGGGATGGACCTCATACTCAGCCTGGCTGTTGCTG
AGCCTG

TACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTTTTGTGATTGCTTGGGGTCTA
AGAAGGACTAATTCTGGGGTTTCTGGTTTTGCTTCATTTGATTCTTTTTG
TTCCATAAATTTTAGATACTTTATTAAGCTTTACATAAAACTTTTAACAT
ATATTATGGTACATATGTTATACTTCATGAAACATTTTAGATATGAAGGA
AAATCAGGGCATCGAGATTTATATTTTTACCAATATAAACCATGGTCCTT
CTGTCTTTCTGGATCTTAGTTTATACAATTTAGAAAATGGTCCAGTTTAG
AAAGTAATAACTAAAAAATTCTGAGAGTCTTCCATTGTGACTTAAGGTAT
ACTTATTTATTTACATATGCATGTATTTTTGATACCAGGTCTCTCTATAT
AGCCCTGGTTGGCCTGGCACTCTCTTATCTAAACCAGACTGGATTTGAAT
TCATAGAAATTCACCTTCCTCTGCCTCTTGTGTGCTACGATTAAAGGCAT
ATGCCAGGCTGTCCAGGAGAGACTGCATTTATAAAGGATGACCTCGTGTT
CAAGGTTAAACTCTGCTCATCTTAGTCTATGTTGGAAGAATATTCGTAAT
CAATTTGAGAAAGACTCCCATACAAAACAAATTGATTGCACATTTGCTAA
CTTACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no269_i18.b1 MSMg01no269_i18.b1 CHROMAT_FILE:
MSMg01no269_i18.b1 PHD_FILE: MSMg01no269_i18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:02 2005
         (588 letters)



>mm_chr7_47079114_47080101
          Length = 988

 Score = 1129 bits (584), Expect = 0.0
 Identities = 584/584 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctacattgccacatttaattaaagttttttattgctcatattgggtggaaagct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctacattgccacatttaattaaagttttttattgctcatattgggtggaaagct 264

                                                                       
Query: 65  ggaaaagtttattagtcatcctatagagaaagtgatgacagtactttgaaaatagcattt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggaaaagtttattagtcatcctatagagaaagtgatgacagtactttgaaaatagcattt 324

                                                                       
Query: 125 atgggactttatttatattttatgcaaaacaaagtagccagtataattagacagtaattt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgggactttatttatattttatgcaaaacaaagtagccagtataattagacagtaattt 384

                                                                       
Query: 185 gtaacttccaacgtaaacattttggagcagaggtagtgtaagccagcgctaattagagag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtaacttccaacgtaaacattttggagcagaggtagtgtaagccagcgctaattagagag 444

                                                                       
Query: 245 ctgttagagaaaatatatatgtggtaacagattgacatgatccaccaaacagcaggctat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctgttagagaaaatatatatgtggtaacagattgacatgatccaccaaacagcaggctat 504

                                                                       
Query: 305 ttttaagtccatgctgcttttaaattctattttgtttagtagtcttgggacaacttttaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttttaagtccatgctgcttttaaattctattttgtttagtagtcttgggacaacttttaa 564

                                                                       
Query: 365 gaggagagtctcatgactttacttgcagtttctttaactccaatcaaactttgcaacgtg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gaggagagtctcatgactttacttgcagtttctttaactccaatcaaactttgcaacgtg 624

                                                                       
Query: 425 agctcgccatggcaaagcccattaacaggacttttttgtctttgttgtcccacagctcca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agctcgccatggcaaagcccattaacaggacttttttgtctttgttgtcccacagctcca 684

                                                                       
Query: 485 gagagaatgataatcctgagcaccatttaacaattgtgcttttgacaatgaaaagcatgt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gagagaatgataatcctgagcaccatttaacaattgtgcttttgacaatgaaaagcatgt 744

                                                       
Query: 545 tagccagcagcttgtcagggatacttggacatggtcattaattc 588
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tagccagcagcttgtcagggatacttggacatggtcattaattc 788


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space:   565284
Effective search space used:   565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no269_i18.g1 MSMg01no269_i18.g1 CHROMAT_FILE:
MSMg01no269_i18.g1 PHD_FILE: MSMg01no269_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:02 2005
         (630 letters)



>mm_chr7_47257320_47258349
          Length = 1030

 Score = 1046 bits (541), Expect = 0.0
 Identities = 544/545 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttttgtgattgcttggggtctaagaaggactaattctggggtttctggttttgcttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tcttttgtgattgcttggggtctaagaaggactaattctggggtttctggttttgcttca 486

                                                                       
Query: 61  tttgattctttttgttccataaattttagatactttattaagctttacataaaactttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tttgattctttttgttccataaattttagatactttattaagctttacataaaactttta 426

                                                                       
Query: 121 acatatattatggtacatatgttatacttcatgaaacattttagatatgaaggaaaatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 acatatattatggtacatatgttatacttcatgaaacattttagatatgaaggaaaatca 366

                                                                       
Query: 181 gggcatcgagatttatatttttaccaatataaaccatggtccttctgtctttctggatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gggcatcgagatttatatttttaccaatataaaccatggtccttctgtctttctggatct 306

                                                                       
Query: 241 tagtttatacaatttagaaaatggtccagtttagaaagtaataactaaaaaattctgaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tagtttatacaatttagaaaatggtccagtttagaaagtaataactaaaaaattctgaga 246

                                                                       
Query: 301 gtcttccattgtgacttaaggtatacttatttatttacatatgcatgtatttttgatacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gtcttccattgtgacttaaggtatacttatttatttacatatgcatgtatttttgatacc 186

                                                                       
Query: 361 aggtctctctatatagccctggttggcctggcactctcttatctaaaccagactggattt 420
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 185 aggtctctctatatagccctggttggcctggcattctcttatctaaaccagactggattt 126

                                                                       
Query: 421 gaattcatagaaattcaccttcctctgcctcttgtgtgctacgattaaaggcatatgcca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 gaattcatagaaattcaccttcctctgcctcttgtgtgctacgattaaaggcatatgcca 66

                                                                       
Query: 481 ggctgtccaggagagactgcatttataaaggatgacctcgtgttcaaggttaaactctgc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65  ggctgtccaggagagactgcatttataaaggatgacctcgtgttcaaggttaaactctgc 6

                
Query: 541 tcatc 545
           |||||
Sbjct: 5   tcatc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space:   632400
Effective search space used:   632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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