BAC Information

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BAC

Clone NameMSMg01-270F22
Chromosome7 (Build37)
Map Location 35,072,105 - 35,072,485
singlet/doubletsinglet
Overlap genenone
Upstream geneEG434676, EG668431, Abpd, EG545948, LOC435963, LOC435962, EG626970, LOC100043859, LOC627004, LOC100043398, LOC100043401, Scgb2b1, LOC668440, Abpz, LOC100043860, LOC627079, LOC635803, Abpg, LOC100043864, LOC100043865, Abpb, Abpa, LOC100043866, LOC100043867, LOC100043868, Wtip, Sae2, LOC100043410, Pdcd2l, Gpi1, 4931406P16Rik, EG619734
Downstream geneLsm14a, LOC668460, LOC668464, Kctd15, Chst8, Pepd, Cebpg, Cebpa, Slc7a10, Wdr88, Gpatch1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-270F22.T7 (MSMg01no270_f22.b1)MSMg01-270F22.TJ (MSMg01no270_f22.g1)
ACCAG410225AG410226
length728758
length of high quality
(start - end)		356 (373 - 728)692 (67 - 758)
definitionCHROMAT_FILE: MSMg01no270_f22.b1 PHD_FILE: MSMg01no270_f22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:00 2005CHROMAT_FILE: MSMg01no270_f22.g1 PHD_FILE: MSMg01no270_f22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TGAACCTCTGGAATTCTGCTTTAAAATGCTAAGAGGTCACTTATCCTCTG
ACCTCCACACAAGTGCTTGGCATGTGCATGTACACACACACGCACACACA
CACATACATACACACATGCATAGACACAATATTTTCTTTTATGTATGAGA
GTTCATCTGCACATATACCCCATGTGTGCCTGGAGGCAGTGGCAGTCAGA
AGGTATCAGATCCCCTGGAACTGGAGTTACAGAAGGTCCTGAGCCACTAC
ATGGGTGCGAGGAACCAAACCCAGGTCCTCTACCAGAGCAGCTGCACTCT
TAACTTAAACAGTGTTCTTAGCCATTGCTCTTAAGCACTGAGGCATCTCT
CCAGTCACATACAAAACAATTTTTAAAAAAATAATATCATTTTCTTTGAG
ACTGGGGAGATGTTGGCTAAAGAATGTATCCTGTTCTTGCAGAGGACACC
ACATAGGTTCCCAACAGCCAAGACTGACAATTGCCTGTAACCCAGGCCCC
GGTGAATACAGTGCCTGAAGCTTACCTCAGGCTGGCTCCCTCATGTGCAG
AATCCCATACACACACGCACATGCACTTCATTAAAAATAAATCTTAAAAA
AAAGAAATCTTTTCATCTGTGTATGTTTGGTTATGCATGTGTATGAAGGC
CATAGGACAACTTTAGCTGTTAGTTCTG

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTCCTGCCTTGGCCTCCAGGGTGCTGTATTTCTT
TTCTTTTTTCCTTTTTTCTTACTTTTGTTGTTGTTGCTTTAAAAATAAAT
TAAAATTTTTCCATATTTTTTTGTCAGCATATCGTTTCCTCTTCCTCTGT
ATTTAGTTTTCTTAAAAGTAGTTTCTGGGCTGGAGAGATGACTCAACAGT
TAAGAACACTAGCTGCTCTTCCAGAGGATCTGAGTTTGATTCTTAGCACT
TCTGTGGCAGCTCATAGCCGTTGGTAATTCCAGTTCCAGGGGGTCTGATG
CCCTCTTCTGGCCTTTGCAGACATCAGGCACACTCATAATGTCCAGACAT
ATGTGCAGACAAAACACCCATACACATAAATAAAATATATAAATCTTCTT
TTTAGATGAATTAATTCTGCCTGGTATGGTGTCCTTTGTACAGTGGGTAA
GAGTGCTTGCCTGATTAGGAATCAACATAATAGAAGGAGAGAACAGACTT
CTACAGGTTGTCTTTCAAATTCCATATAAATAAGTAAATGTGGAATTTTA
GAATTGTATTTGTACAAGATACATACAGATTTTTTTTTGTTGTTATTACC
ATTAAACAGAGTAACAGCTGATCACATCGTGCTTACATTGCCCTAGATAC
TCCAAGTCATGTAGAGGTGATTCTCCACTTTGATCATATAACTCTGATCT
GATCTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no270_f22.g1 MSMg01no270_f22.g1 CHROMAT_FILE:
MSMg01no270_f22.g1 PHD_FILE: MSMg01no270_f22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:00 2005
         (692 letters)



>mm_chr7_35071395_35072485
          Length = 1091

 Score =  716 bits (370), Expect = 0.0
 Identities = 379/382 (99%), Gaps = 1/382 (0%)
 Strand = Plus / Minus

                                                                        
Query: 310  aggcacactcataatgtccagacatatgtgcagacaaaacacccatacacataaataaaa 369
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1091 aggcacactcataatgcccagacatatgtgcagacaaaacacccatacacataaataaaa 1032

                                                                        
Query: 370  tatataaatcttctttttagatgaattaattctgcctggtatggtgtcctttgtacagtg 429
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1031 tatataaatcttctttttagatgaattaattctgcctggtatggtgtcctttgtacagtg 972

                                                                        
Query: 430  ggtaagagtgcttgcctgattaggaatcaacataatagaaggagagaacagacttctaca 489
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 971  ggtaagagtgcttgcctgattaggaatcaacataatagaaggagagaacagacttctaca 912

                                                                        
Query: 490  ggttgtctttcaaattccatataaataagtaaatgtggaattttagaattgtatttgtac 549
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 911  ggttatctttcaaattccatataaataagtaaatgtggaattttagaattgtatttgtac 852

                                                                        
Query: 550  aagatacatacagatttttttttgttgttattaccattaaacagagtaacagctgatcac 609
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851  aagatacatacaga-ttttttttgttgttattaccattaaacagagtaacagctgatcac 793

                                                                        
Query: 610  atcgtgcttacattgccctagatactccaagtcatgtagaggtgattctccactttgatc 669
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792  atcgtgcttacattgccctagatactccaagtcatgtagaggtgattctccactttgatc 733

                                  
Query: 670  atataactctgatctgatctga 691
            ||||||||||||||||||||||
Sbjct: 732  atataactctgatctgatctga 711


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1091
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1081
Effective search space:   737242
Effective search space used:   737242
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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