Query= MSMg01no270_g02.b1 MSMg01no270_g02.b1 CHROMAT_FILE:
MSMg01no270_g02.b1 PHD_FILE: MSMg01no270_g02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:01 2005
(576 letters)
>mm_chr7_109436438_109437413
Length = 976
Score = 901 bits (466), Expect = 0.0
Identities = 498/512 (97%), Gaps = 8/512 (1%)
Strand = Plus / Minus
Query: 1 cagctgtgtacaagctaccagacagacagtagtatctagtatatcctgtgattctgacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cagctgtgtacaagctaccagacagacagtagtatctagtatatcctgtgattctgacac 445
Query: 61 ccatcatgtacaggtaaatttagctaacagaactgttctccccaaacccagagtcctact 120
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ccattatgtacagataaatttagctaacagaactgttctccccaaacccagagtcctact 385
Query: 121 ataacccattctcataaaaactatatcccaacctaattcatgctagaatgcaaggaagac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ataacccattctcataaaaactatatcccaacctaattcatgctagaatgcaaggaagac 325
Query: 181 aaagttttgatccctcagttcaagagtaacttcatcacaataatacttgcatttttaaag 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaagttttgatccctcagttcaagagtaacttcatcacaataatacttgcatttttaaat 265
Query: 241 atttatattaatttatggatcttactattttaaaaatataagtacttgcactcgcgagcg 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atttatattaattaatggatcttactattttaaaaatataagtacttgcactcgcg---- 209
Query: 301 cgcgcgcgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttatttg 360
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 208 --cgcgcgcgtgtgtgtgtgtgtgtgtgtgtgtgtgt-t-tgtgtgtgtgtgtttatttg 153
Query: 361 tttgtttaagacagtctcttgagctggagagatggctcagcggttaagagtactgactgc 420
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 152 tttgtttaagatagtctcttgagctggagagatggctcagcggttaagagtactgattgc 93
Query: 421 tcttgcagaggtcctgagttcaattcccagcaaccacatggtagctcgaaatctgtaatg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 tcttgcagaggtcctgagttcaattcccagcaaccacatggtagctcgaaatctgtaatg 33
Query: 481 ggaagcaatgccctcttctagtgggtctgaag 512
||||||||||||||||||||||||||||||||
Sbjct: 32 ggaagcaatgccctcttctagtgggtctgaag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space: 546756
Effective search space used: 546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no270_g02.g1 MSMg01no270_g02.g1 CHROMAT_FILE:
MSMg01no270_g02.g1 PHD_FILE: MSMg01no270_g02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:01 2005
(403 letters)
>mm_chr7_109266586_109267388
Length = 803
Score = 737 bits (381), Expect = 0.0
Identities = 400/409 (97%), Gaps = 6/409 (1%)
Strand = Plus / Plus
Query: 1 aatcatcgctaccttagaaagcagtgactcctggtttaagaacctccagtacagagcagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 aatcatcgctaccttagaaagcagtgactcctggtttaagaacctccagtacagagcagg 254
Query: 61 ctttgaa-----aagtatattcagggccgggcagtggtggcgcacgcctttaatcccagc 115
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ctttgaatagaaaagtatattcagggccgggcagtggtggcgcacgcctttaatcccagc 314
Query: 116 acttggtaggcagaggcaggcggatttctgagcttgaggcctagtgcctgtggaagccag 175
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 315 acttggtaggcagaggcaagcggatttctgagctcgaggcctagtgcctgtggaagccag 374
Query: 176 agagcggcggaccctcaagaactagaatctgggacagttctgagccactttatgggtgct 235
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 375 agagcggcggaccctcaagaactagaatctggaacagttctgagccactttatgggtgct 434
Query: 236 gagaatcaagcctgggtcctcttgagaagcagccagtgttcttcaccactaggccatctt 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gagaatcaagcctgggtcctcttgagaagcagccagtgttcttcaccactaggccatctt 494
Query: 296 ccagcccca-tttctcagaactcttactaggggatggagacaagagcatcaccctggaac 354
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ccagccccaatttctcagaactcttactaggggatggagacaagagcatcaccctggaac 554
Query: 355 tgacctgccatctagcctggagaaggcagcatggcagcaggaattagag 403
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tgacctgccatctagcctggagaaggcagcatggcagcaggaattagag 603
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 803
Length adjustment: 9
Effective length of query: 394
Effective length of database: 794
Effective search space: 312836
Effective search space used: 312836
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
