BAC Information

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BAC

Clone NameMSMg01-270L03
Chromosome7 (Build37)
Map Location 93,924,513 - 93,924,743
singlet/doubletsinglet
Overlap genenone
Upstream geneEG620928, EG546980, LOC666382, LOC637652, LOC637667, EG666418, LOC100039471, EG546981, Vmn2r-ps86, Vmn2r76, Olfr310, Olfr309, Olfr308, Olfr307, Olfr306-ps1, Olfr305, Olfr304, Olfr303, Olfr301, Olfr1531-ps1, Olfr300-ps1, Olfr299, Olfr298, Olfr297, Olfr296-ps1, Olfr295, Olfr294, Olfr293, Olfr292, Folh1
Downstream geneEG546983, Vmn2r-ps87, LOC637896, EG621430, LOC621477, Nox4, Tyr, Grm5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-270L03.T7 (MSMg01no270_l03.b1)MSMg01-270L03.TJ (MSMg01no270_l03.g1)
ACCAG410460AG410461
length679740
length of high quality
(start - end)
229 (69 - 297)566 (75 - 640)
definitionCHROMAT_FILE: MSMg01no270_l03.b1 PHD_FILE: MSMg01no270_l03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:25 2005CHROMAT_FILE: MSMg01no270_l03.g1 PHD_FILE: MSMg01no270_l03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ATCAGGAAGATCTCTTCACAGAGACTAAAGCACAGGATTAACAGACAGAA
CTATCAGGGAAAGGAGAGCGCTCACTCATGTGTGTAAGTATTGGCTCTTC
AGGACTAAGTCTCTCACATTCCTCAAAGTTTATTGAAGTTAATACGGATC
ATTAAGCAAGCATAAGGACTCTGCAATACTTTTCTGAGTACAGGCTGTAC
TATTTGGCAAGTTATCATTGCTTTCTGATATTCTTGTTTATCTCTCTAAT
TAGCCCCTGGTCATAAAGTCTCNAAGAGAAACTGAAAGCTCACTCCNAAG
AAAGCAGAAGNTGGCAGTTTTCCTTAAGCCTACCTACAATTGGGCTCACA
GTACCGCCCGAATTTTGGGGGGCGAAAAAAGCCTTAAGAAAAAAACTTTC
TATTTTCCCAGGGGGAAAAAAAAGGGGGGAAGGAAATTTTGTACCCGCCA
AAAAACCCTGGCGGGGGAAGGGACAGAAAACGGGGGGNNNNNNAAAAAAA
TAATTTTTCCCCCAAAGTTGGGGAGCCGGCGGCTGNNAAAAAAACCAAAA
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGNNNNNNNNNNNCGN
NTTAGCACTTTTCTTTTTTTTNNNNNNTG
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAGGTTATTCCTCACTTTCTCTCTAT
AAGGTTCCAATATATCCACAGGTATGTTTAGGTCTTTCACACATTAATAG
TTGTGTCTTATTCAAGGAGATGTGGATCTATTTATATTTCTCTTCTACAT
GTAGCTAACCAGATACAGGACCAGTACCATTTGTGGAAGATGGTGTCTTC
TTTCCACTGCATATTTCTGGCTTCTTTATCAAAACCCAGGTGTCAGTATG
TACATGGATGTATGCATGGATTGTCAACTTGATTTTGTTGATAAATATGT
TTGTTTAATGCCCATGGCCTACTTTTACTTTTGTATATTTCTATATTACA
CTTTGAGGTCATCAATGCTGACACTTTTAGCACCTCTTTTATTAATCATG
GTTATTTTAGTTATCCTGTATGGTTTTGTGTTGTTTGGTATCTGTGATTC
CATATTAAGCTGAAAATTGTTCTTTCAAACTCTGTGAAGAGTTGTTTGGA
AATTTTGATGGAATTGTATTGAGTTTGTAGATTGCTTTTGGTAGCATGGT
CATTGTTACTATATTAATCCTATCAATCCATGAGCTGAAAATTGTTCTTT
CAAACTCTGTGAAGAGTTGTTTGGAAATTTTGATGGAATTGTATTGAGTT
TGTAAAATGCTTTTGGGAACATGGNCATTGTTACTATATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no270_l03.b1 MSMg01no270_l03.b1 CHROMAT_FILE:
MSMg01no270_l03.b1 PHD_FILE: MSMg01no270_l03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:25 2005
         (229 letters)



>mm_chr7_93924313_93924943
          Length = 631

 Score =  420 bits (217), Expect = e-122
 Identities = 227/231 (98%), Gaps = 2/231 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagagactaaagcacaggattaacagac--agaactatcagggaaaggagagcgctcact 58
           ||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||
Sbjct: 431 cagagactaaagcacaggattaacagacagagaactatcagggaaaggagagtgctcact 372

                                                                       
Query: 59  catgtgtgtaagtattggctcttcaggactaagtctctcacattcctcaaagtttattga 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 catgtgtgtaagtattggctcttcaggactaagtctctcacattcctcaaagtttattga 312

                                                                       
Query: 119 agttaatacggatcattaagcaagcataaggactctgcaatacttttctgagtacaggct 178
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 311 agttaatacggatcattaagcaagtataaggactctgcaatacttttctgagtacaggct 252

                                                              
Query: 179 gtactatttggcaagttatcattgctttctgatattcttgtttatctctct 229
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 gtactatttggcaagttatcattgctttctgatattcttgtttatctctct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 631
Length adjustment: 9
Effective length of query: 220
Effective length of database: 622
Effective search space:   136840
Effective search space used:   136840
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)