Query= MSMg01no271_g12.b1 MSMg01no271_g12.b1 CHROMAT_FILE:
MSMg01no271_g12.b1 PHD_FILE: MSMg01no271_g12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:16 2005
(325 letters)
>mm_chr7_139090364_139091088
Length = 725
Score = 453 bits (234), Expect = e-132
Identities = 276/296 (93%), Gaps = 11/296 (3%)
Strand = Plus / Plus
Query: 5 gaattcctcagactccagaccctacctcaggaaggttccattgcctcttagtggcacttc 64
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccccagactccagaccctacctcaggaaggttccattgcctcttagtggcacttc 264
Query: 65 aatggagaccaaacttccaacacaagcctctgagttcacacttagactgcatctatactt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatggagaccaaacttccaacacaagcctctgagttcacacttagactgcatctatactt 324
Query: 125 agcagagagttgaaattatatctccaaagtcatatgcctagtgagaggcattagggataa 184
||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 325 agcagagagttgaaattatatctccaaggtcatgcgcctagtgagaggcattagggataa 384
Query: 185 ttccaatgcaggcattcggttctcttaaccctatattagactgttactttgggta--gag 242
|||||| ||||||||| |||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 385 ttccaacgcaggcatttggttctcttaaccctatattagactgctactttgggtacagag 444
Query: 243 accc---------caaaaccccactgaaggatgagcatgagtcagcgtggggcata 289
|||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 445 accctcgctaccccaaaaccccactgaagggcgagcatgagtcagcgtggggcata 500
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space: 226256
Effective search space used: 226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no271_g12.g1 MSMg01no271_g12.g1 CHROMAT_FILE:
MSMg01no271_g12.g1 PHD_FILE: MSMg01no271_g12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:16 2005
(284 letters)
>mm_chr7_139244741_139245424
Length = 684
Score = 503 bits (260), Expect = e-147
Identities = 278/284 (97%)
Strand = Plus / Minus
Query: 1 tgccctatccagaaactggtagagctggaagttgttaggtcttgccctcagccacctaga 60
||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 484 tgccctagcaagaaactggtagagctggaagttgttaggtcttgcccttagccacctaga 425
Query: 61 cactcacatttcacaggactgcacatgggagaaagtagcagggcatgttggtgtcaaagt 120
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 424 cactcacatttcacagggctgcacatgggagaaagtagcagggcctgttggtgtcaaagt 365
Query: 121 tagggctccttacttagaaccacgataaggggatgtctgagatcgtgagtctgcatcctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tagggctccttacttagaaccacgataaggggatgtctgagatcgtgagtctgcatcctg 305
Query: 181 gctcaggtgtgatgggactgagttgctgtgtcctgagatctccctatgatgaaaacagtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gctcaggtgtgatgggactgagttgctgtgtcctgagatctccctatgatgaaaacagtt 245
Query: 241 acatacattggctgtccatgggctagctacccagtgtgaccagt 284
||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 244 acatacattggctgtccatgggctagctacccagtgtcaccagt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space: 185625
Effective search space used: 185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
