Query= MSMg01no271_j04.b1 MSMg01no271_j04.b1 CHROMAT_FILE:
MSMg01no271_j04.b1 PHD_FILE: MSMg01no271_j04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:28 2005
(658 letters)
>mm_chr7_109748439_109749496
Length = 1058
Score = 1139 bits (589), Expect = 0.0
Identities = 645/681 (94%), Gaps = 27/681 (3%)
Strand = Plus / Plus
Query: 5 gaattcagtttggtttttattgtgactgaggtgacaaactgctgtggaggcaggcatagg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 gaattcagtttggtttttattgtgactgaggtgacaaactgctgtggaggcaggcatagg 237
Query: 65 tttgggccagatgatgtatattatgtagct---------------------------att 97
|||||||||||||||||||||||||||||| |||
Sbjct: 238 tttgggccagatgatgtatattatgtagctgggccagatgatgtatattatgtagctatt 297
Query: 98 aaaaggaagtcacccatgcattcctttaaaaatgtcctttaagtaccaactatgttcagt 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 aaaaggaagtcacccatgcattcctttaaaaatgtcctttaagtaccaactatgttcagt 357
Query: 158 agagtctgtgagttctaaattgaattacaggctgtgagttatgaactttacagacaactg 217
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 358 agagtctgtgagttctgaattgaattacaggctgtgagttatgaactttatagacaactg 417
Query: 218 tggatctacaaacacaggcaaagctaacaacaatggtactctcatggtatttttttatac 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tggatctacaaacacaggcaaagctaacaacaatggtactctcatggtatttttttatac 477
Query: 278 agcatttaatattgtggttctcaacctgtgggttgcgactatattggggtcaaacaagcc 337
||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||
Sbjct: 478 agcatttaatattgtggttctcaacctgtgggttgtgaccacattggggtcaaacaagcc 537
Query: 338 tttcatggggattacatatcatatatttacattgtaactcataacagttgcaaacttaca 397
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 538 tttcatggggattacatatcgtatatttacattgtaactcataacagttgcaaacttaca 597
Query: 398 gttatgaagtaacaatgagaataattttatggctgggggattcaccacaacatgaggaac 457
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 gttatgaagtaacagtgagaataattttatggctgggggattcaccacaacatgaggaac 657
Query: 458 tgttaaaggctcacagcataaggacagttgagaaccactgatgtaacaagtttctattga 517
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 658 tgttaaaggctcacagcataaggacagttgagaaccactgatgtaacaagttgctattga 717
Query: 518 aatgactgagaaagtcttcttgggggtgctcaaaagggcgtttctatgaaggtggcagga 577
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 718 aatgactgagaaagtcttcttggaggtgctcaaaagggcgtttctatgaaggtggcagga 777
Query: 578 tcttggccaggtaggaaagaggactaaggaaaacagtgcagttcaatatggtaaactata 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tcttggccaggtaggaaagaggactaaggaaaacagtgcagttcaatatggtaaactata 837
Query: 638 cgggtgactatttgagcagag 658
|||||||||||||||||||||
Sbjct: 838 cgggtgactatttgagcagag 858
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space: 679104
Effective search space used: 679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no271_j04.g1 MSMg01no271_j04.g1 CHROMAT_FILE:
MSMg01no271_j04.g1 PHD_FILE: MSMg01no271_j04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:28 2005
(291 letters)
>mm_chr7_109892002_109892692
Length = 691
Score = 547 bits (283), Expect = e-160
Identities = 289/291 (99%)
Strand = Plus / Minus
Query: 1 tatttggaaaaaaagaaataaccttggaggtgacttccaggcataaagatggctgctgat 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 tatttgggaaaaaagaaataaccttggaggtgacttccaggcataaagatggctgctgat 432
Query: 61 cgggaacacaaagctgtcactggaagcatgtctgatagctaggatctgctggaggtggtg 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 431 cgggaacacaaagctgtcactggaaacatgtctgatagctaggatctgctggaggtggtg 372
Query: 121 aatcttgtcaccacctccctctgcaaaaacatgaatagagggagctgcttgattttgctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 aatcttgtcaccacctccctctgcaaaaacatgaatagagggagctgcttgattttgctt 312
Query: 181 tctgagttgctattgtgtttctctctctccctttgcaaacttagagccaaggacctagaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tctgagttgctattgtgtttctctctctccctttgcaaacttagagccaaggacctagaa 252
Query: 241 tcctgaatattataaaaacgttttccaatctctctatcttggaagatcctt 291
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tcctgaatattataaaaacgttttccaatctctctatcttggaagatcctt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space: 192324
Effective search space used: 192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
