Query= MSMg01no272_g11.b1 MSMg01no272_g11.b1 CHROMAT_FILE:
MSMg01no272_g11.b1 PHD_FILE: MSMg01no272_g11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:33 2005
(338 letters)
>mm_chr7_64638195_64638932
Length = 738
Score = 538 bits (278), Expect = e-157
Identities = 314/338 (92%), Gaps = 20/338 (5%)
Strand = Plus / Plus
Query: 1 tttgtcctgactgggtccaggctcatttccattccgacttccagacaggagtcaaatgtc 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgtcctaactgggtccaggctcatttccattccgacttccagacaggagtcaaatgtc 260
Query: 61 agttccacaccaagaggcttgtcctcaggcacgtcacttttctgaagttaacaaggaatc 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 agttccacaccaagaggcttgtcctcaggcatgtcacttttctgaagttaacaaggaatc 320
Query: 121 agtgaaaagtctaatcattttaaagttcagtctttcatcttcactcagatcttcagaggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtgaaaagtctaatcattttaaagttcagtctttcatcttcactcagatcttcagaggc 380
Query: 181 atatataaacatatatggacatgtcagctcttatctgcaccagtctcttgtgtgtgttaa 240
|||||||||| || |||||||||||||||| |||||||||||
Sbjct: 381 atatataaac------------gt--------atctgcaccagtctctcgtgtgtgttaa 420
Query: 241 aaagctatggccaataggagttacagtagtccagcagcctaaaaccaaatccatgcattg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aaagctatggccaataggagttacagtagtccagcagcctaaaaccaaatccatgcattg 480
Query: 301 ctgtctcttctttactaaatattgttcacagaactccc 338
||| ||||||||||||||||||||||||||||||||||
Sbjct: 481 ctgactcttctttactaaatattgttcacagaactccc 518
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space: 239841
Effective search space used: 239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no272_g11.g1 MSMg01no272_g11.g1 CHROMAT_FILE:
MSMg01no272_g11.g1 PHD_FILE: MSMg01no272_g11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:33 2005
(626 letters)
>mm_chr7_64775502_64776528
Length = 1027
Score = 824 bits (426), Expect = 0.0
Identities = 514/552 (93%), Gaps = 23/552 (4%)
Strand = Plus / Minus
Query: 1 ctctgcgtagcactgcccttgctctgctctctctaagcacatccagcaatccctggagat 60
||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct: 843 ctctgggtagcactgcccttgctctgctctctccaagcacatccaggaatccctggagat 784
Query: 61 gccctgattattctttagttgatactttaaatacatgcattaacatggttgcattaacat 120
||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 783 gccctgattattctttagttgatactttaaataca--------------tgcattaacat 738
Query: 121 gtttgattatgaatggctaatatttttttctgcttttactaaagtgaatatagatatctc 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 737 gtttgattatgaatggctaata-ttttttctgcttttactaaagtgaatatagatatctc 679
Query: 181 tcttttgcattataaatgactaataaggaagaattttcagagacttggctggccttagat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tcttttgcattataaatgactaataaggaagaattttcagagacttggctggccttagat 619
Query: 241 gggacctgacatcagctccagttagagtggcattgtctagtgctctgtgatgatgccact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 618 gggacctgacatcagctccagttagagtggcattgtctagtgctctgtgatgatgtcact 559
Query: 301 cagctgcactcttattttaaaa-cagtgctcattcaggacttttattcatctttctcccc 359
|||||| ||||||||||||||| ||||| |||||||||||||||||||||||||| ||||
Sbjct: 558 cagctgtactcttattttaaaaacagtgttcattcaggacttttattcatctttcccccc 499
Query: 360 -taacccctttt-tttcccagataataattttgtctttaaaaacctgggatttttttt-a 416
||||||||| | ||||| |||||||||||||||||||||||||||||| |||||||| |
Sbjct: 498 ctaaccccttctctttcc-agataataattttgtctttaaaaacctgggtttttttttta 440
Query: 417 tttattactttatttctcttacagaaactat-ataaaaaaatcttgcttttgtcttttaa 475
||| ||| ||||||||||| |||||||||| | ||||||| ||||||||||||||||||
Sbjct: 439 tttcttattttatttctctaacagaaactacca-aaaaaaa-cttgcttttgtcttttaa 382
Query: 476 aatgaaaatgtttcataggtgccaggcctagaacttctttttataaattttagttgcaga 535
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 381 aatgaaaatgtttcataggtgccaggcctagaacttcttattataaattttaattgcaga 322
Query: 536 ctcaggtttgtt 547
||||||||||||
Sbjct: 321 ctcaggtttgtt 310
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1027
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1017
Effective search space: 626472
Effective search space used: 626472
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
