BAC Information

Click to search

BAC

Clone NameMSMg01-272I11
Chromosome7 (Build37)
Map Location 91,320,705 - 91,321,001
singlet/doubletsinglet
Overlap genenone
Upstream geneA530021J07Rik, EG666160, Tmc3, Stard5, Il16, Phgdh-ps1, LOC666170, 1700026D08Rik, Mesdc1, Mesdc2, 9930013L23Rik, 2210412D01Rik
Downstream geneArnt2, LOC100039239, Fah, Zfand6, 2610206C17Rik, EG620480, Olfr291, LOC666276, Olfr290, ENSMUSG00000070600, F830104D24Rik, LOC620641, EG620672
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272I11.T7 (MSMg01no272_i11.b1)MSMg01-272I11.TJ (MSMg01no272_i11.g1)
ACCAG411785AG411786
length733735
length of high quality
(start - end)
297 (70 - 366)290 (77 - 366)
definitionCHROMAT_FILE: MSMg01no272_i11.b1 PHD_FILE: MSMg01no272_i11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:42 2005CHROMAT_FILE: MSMg01no272_i11.g1 PHD_FILE: MSMg01no272_i11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTTTAATTTTCAGGATGTAATGGAGTTGAACTACTACATGGCTACC
ATGCACAAAACCCTGGGTTCTACCCCCTGAACCACACAAACTGGTCATAC
ATTCGTAACCTAGCATTCAGAGGTTAGAGGCAGGAGAGTCAAGGTCATGG
TCACATAGCAAGTCTGAGGACAACTTGAACTATATGAGACCCTGTTTCCA
AAAGAAAAAAAAGGGACAGTGAGGATAGGAATAAAAGAAAATAAATATCC
CCTCTTAACCTTTGGTAGGCCAATCAGTGACTAAGAATTTGGGTTCAAAT
CCTAACTCTGTATTTACTAGCTGGGACAACCTGGGCATAGGGCTGCCCTG
CCTGCTGTACTGAGGCCTGTAAGGATCAGAATCAAAAACATGTGCACTGG
ATCAAGATCCTGGCATTGAGAGATGGATTGCCAAGGTCCACTACTGTCTT
CTTTTTAAACTTGTGAGGTGCAGGCACAGACCATAGCAGGTTTATCTGTT
TTGAGAAAATTCTTTGCTCGTGTGCTTTGTGCTTTGTTTGCAAATCATAG
TTCCTCCTGTATAATGACTACAGTGTCTAGTAATGATTACAGAAATGAAC
ACTTTGGAGTAATTACTGTGCTTGCAGAGGATATATCAATTCAGGCACTT
CACGGGTGCTGACTTAGTTTGTTTGCCCATTCT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATC
CAGCAATACCTCTCCTGTTCATATATCCCGAACATGCCCCAACAGGTAAG
AAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGAAACTCACACAATATGTATTCACTGATAA
GTGGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATATAATTTC
CTAAACACATGAAACTCAAGAAGAATGAAGACTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_i11.b1 MSMg01no272_i11.b1 CHROMAT_FILE:
MSMg01no272_i11.b1 PHD_FILE: MSMg01no272_i11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:42 2005
         (297 letters)



>mm_chr7_91320509_91321205
          Length = 697

 Score =  516 bits (267), Expect = e-151
 Identities = 288/297 (96%), Gaps = 4/297 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtaatggagttgaactactacatggctaccatgcacaaaaccctgggttctaccccctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 197 tgtaatggagttgaactactacatggctaccatgcacaaaaccctgggttctatcccctg 256

                                                                       
Query: 61  aaccacacaaactggtcatacattcgtaacctagcattcagaggttagaggcaggagagt 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 257 aaccacacaaactggtcatacatttgtaacctagcattcagaggttagaggcaggagagt 316

                                                                       
Query: 121 caaggt----catggtcacatagcaagtctgaggacaacttgaactatatgagaccctgt 176
           ||||||    |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 317 caaggtcacccatggtcacatagcaagtctgaagacaacttgaactatatgagaccctgt 376

                                                                       
Query: 177 ttccaaaagaaaaaaaagggacagtgaggataggaataaaagaaaataaatatcccctct 236
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 377 ttccaaaagaaaaaaaagggacagtgaggataagaataaaagaaaataaatatcccctct 436

                                                                    
Query: 237 taacctttggtaggccaatcagtgactaagaatttgggttcaaatcctaactctgta 293
           |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 437 taacctttggtaggccaatcagtgactaagaatttgggttcaaaccctaactctgta 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space:   198144
Effective search space used:   198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)