BAC Information

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BAC

Clone NameMSMg01-272J14
Chromosome7 (Build37)
Map Location 102,915,679 - 102,916,014
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040132, LOC666823
Downstream geneFrda-ps, EG666836, Odz4, LOC670727, LOC666858
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272J14.T7 (MSMg01no272_j14.b1)MSMg01-272J14.TJ (MSMg01no272_j14.g1)
ACCAG411839AG411840
length758755
length of high quality
(start - end)
336 (381 - 716)292 (70 - 361)
definitionCHROMAT_FILE: MSMg01no272_j14.b1 PHD_FILE: MSMg01no272_j14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:47 2005CHROMAT_FILE: MSMg01no272_j14.g1 PHD_FILE: MSMg01no272_j14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTC
CCTCCTTCTCAGTTGTCTGCTTATGAGAGCCCTCAGTGTGTCTCTGGCTC
AGTTTTCCCAAGGTGTCCCAAGAACCTTAGCTTTTATGTGAAGCAGAGTG
TTTGCTCCTTACTCGTGAAGTTTCCACTTTTGTGGGGCAGATTGTAGGTG
GGCGAGATGAAGATTCCAGATTTGGAAATAGGAGCAACTTCTTGGCACAA
TGGTCTGTCATAAAATGATCACAAGAGCAGTGTTACCCAGCTGTGTCTCT
CAACTGCAGTTTCCCCATCTGTAAATACAGATATTAGTTGCAACTACATG
GGATGTTATTGTTTTTAAACACCCCACGACCTAGTGAGCACTATATAAGT
ATAAATCATTATAACATGATCATTATTTCATATATATTAAGACCAAAGGG
CATAACCTCTTTTAAATAGTTATTCTTCACTCCTTTTCTCTCTTACATAT
TACATATCTAATTTTATCCTAGCAGACTTTTGCTTTCTAAACCAGGTTGT
ACTGAGCCTTCATGCATACCATGGCGTGCCTAGGAGTGAGTGTTCCCGTT
TACCTGTAACAACAGCTATTAGTGGTTGGGTGATGGCTTAGGGCTCTTTC
ACAGAGTCCTGTTTCCTCCTTAGGTGTTATTCTGCCTCGTTAGGGAGAGA
AAACCAGAGGAGCTGTCATATGCCACCTGTCATTCCTCTAGATTTAGACA
TGATAATN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGACCAAGGTCTTTGAACTTGCTAGCCACTC
AGCCTATGCTCCTGTTCTACCCCTCATTTCTTTAAACACTAGACCCAAAT
TATCAAATTCAAATTCCAACTCTCTGACTTACTGTTCTGGGTAAGTTAAA
GCAAGATGCTTGCTAATTCTTACCTCACTTTCTCATCTGGAAAAATGGCA
ATAATAATTTTCAACTCTTAGGCATGCTATAAGATCAGGCACATCCAACC
TGTTCACATTGCAACAGGTTACTGCTATGACATAAGTTCATTGCTGAGAG
CTGAGCATTCTATTATTCGCCCCCCCCCCCTCTTATGCTTTAAGTAAGCT
TCTCATTTTGTATTGGCATATATTGGAAGATATGCAGGGGCACACAAAAT
CCATAGGGCTGAGCTGGGCAAGTCTGAACCTTGAATGGTGCTAGGCAGGA
AACATATTCCAGATGATTCTGAGCTGGCCACTCGTCTGGATCCACAGTCT
ACCCTGTGCCTGGTTTAGGAGGCCCTCATTTTAATTCTAATTTTTTTTCT
TTTGAGTGAATGAATACATACACTCTGGTTCTTTTCCTCTTGCATGCCTG
GATGTCAACAGGGTTGAATGGCTTCTCTAGGAGTAGACGAGGCTGTTGCT
GTTTTGATGTGCACAGACTTTCCTACCTGGCATGAATGGGTCAGTCTCAT
GCAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_j14.b1 MSMg01no272_j14.b1 CHROMAT_FILE:
MSMg01no272_j14.b1 PHD_FILE: MSMg01no272_j14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:47 2005
         (336 letters)



>mm_chr7_102915479_102916214
          Length = 736

 Score =  619 bits (320), Expect = 0.0
 Identities = 332/336 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctagtgagcactatataagtataaatcattataacatgatcattatttcatatatattaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 ctagtgagcactatataagtataaatcattataacatgatcattattttatatatattaa 260

                                                                       
Query: 61  gaccaaagggcataacctcttttaaatagttattcttcactccttttctctcttacatat 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 gaccaaagggcataacctcttttaaataattattcttcactccttttctctcttacatat 320

                                                                       
Query: 121 tacatatctaattttatcctagcagacttttgctttctaaaccaggttgtactgagcctt 180
           |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 321 tacatatctaattttatcctagcagagttttgctttctaaaccagattgtactgagcctt 380

                                                                       
Query: 181 catgcataccatggcgtgcctaggagtgagtgttcccgtttacctgtaacaacagctatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catgcataccatggcgtgcctaggagtgagtgttcccgtttacctgtaacaacagctatt 440

                                                                       
Query: 241 agtggttgggtgatggcttagggctctttcacagagtcctgtttcctccttaggtgttat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtggttgggtgatggcttagggctctttcacagagtcctgtttcctccttaggtgttat 500

                                               
Query: 301 tctgcctcgttagggagagaaaaccagaggagctgt 336
           ||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctgcctcgttagggagagaaaaccagaggagctgt 536


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 736
Length adjustment: 9
Effective length of query: 327
Effective length of database: 727
Effective search space:   237729
Effective search space used:   237729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)