BAC Information

Click to search

BAC

Clone NameMSMg01-272O24
Chromosome7 (Build37)
Map Location 28,891,735 - 29,056,349
singlet/doubletdoublet
Overlap geneLOC100043774, 9530053A07Rik, Fbl, Dyrk1b, Eid2
Upstream geneCyp2f2, Gm1450, Egln2, Rab4b, Mia1, Snrpa, Itpkc, Adck4, Numbl, Ltbp4, Shkbp1, Spnb4, Blvrb, EG668045, Sertad3, Sertad1, Prx, Hipk4, Pld3, 2310022A10Rik, Akt2, Ttc9b, Map3k10, C030039L03Rik, Zfp60, LOC100043229, LOC100043233, 4933426I21Rik, Zfp59, 4732475C15Rik, Prkcz2, 1700049G17Rik, EG668175, LOC100043771, Zfp780b, C130069I09Rik, LOC100043772, Psmc4
Downstream geneLOC434156, BC089491, Dll3, Timm50, Supt5h, Rps16, Plekhg2, Zfp36, Ixl, Paf1, Samd4b, 1700085B13Rik, Gmfg, Lrfn1, LOC624672, 1700028B04Rik, EG330496, Il28, Sycn, 1190020J12Rik, Pak4, C330005M16Rik, Fbxo27, Fbxo17, Mrps12, Sars2, EG624918, Nfkbib, Sirt2, 5830482F20Rik, Hnrpl, Ech1, Lgals4, Lgals7, Capn12, Actn4, Eif3s12, Map4k1, Ryr1, Rasgrp4, 1110006G06Rik, Spred3, Ggn, Psmd8, A230107C01Rik, Kcnk6, Yif1b, Spint2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272O24.T7 (MSMg01no272_o24.b1)MSMg01-272O24.TJ (MSMg01no272_o24.g1)
ACCAG412081AG412082
length747763
length of high quality
(start - end)		296 (70 - 365)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no272_o24.b1 PHD_FILE: MSMg01no272_o24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:12 2005CHROMAT_FILE: MSMg01no272_o24.g1 PHD_FILE: MSMg01no272_o24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,891,735 - 28,892,028)(29,056,060 - 29,056,349)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGACTTCTGACTAGCATTGCCCTACCATTATGGTTCTGGGTTTGT
GGATAAAGTCTACTCAAGTCATGACCTACCTCATCCTGGGGTTTAGCACA
TCTGATTCTAGTCAGAAAGGGACTTAGCTCCTCCGAGAAGATACATCGCT
CTCTGAAGGAGCTGAGAGTGCCTGTCTCAAGCTGAGGCACTGGCATCCTC
ATCCTAACTGACCCTTCCACACAGGTGACTGTGGATGGTGAAGTCGTGGC
CCTGCCTGTGGCCACAGGCCACGTGAGTGTGACAGCCGAAGGCAGAAACA
TAGTTCTGCAGACTTTTTAGGGAATGAAGGTTCTCTTCGATGGCGATGCC
CACATCCTCATGTCCATCCCGAGTTCCTTCCGTGGACGTCTCTGTGGCCT
CTGTGGGAATTTCAATGGGAACTGGAGTGACGACTTTGTGCTGCCTAGTG
GAGCAGTGGCCCCCAACGTGGAGGCCTTTGGAACCGCATGGCGAGCTCCC
GGCTCCTCCTTGGGCTGTGGCGAAGGCTGCGGGCCCCAAGGCTGCCCAGT
GTGCTTGGCATAGGACACACAAGCATATGAGAACCATGATGCCTGTTTGT
AAGATCCGTGACCTCTATGGTCCCTTTGAAGCTTGTCACAAGGTTCTGAC
CTCTTTGGAAATTTCCGCACATGTGTGTTTGACCTGCGTCCCCTTAN

CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAAATTTCGCACAATTTAGGGAAA
ACAGGAAAAACAAAAACCCCTAACCTTAGTTGACACAAGCCTGGTGGCCT
GGTTTGATCTGCTCAACTCACATCGAGAATAAAAATAAAATCTTTCAGAA
AAGCCACTTAAATAACTAGAAAAAAATATATTTGTAACTCATATCACAAA
CTATTGTTATACCTAATGTCGCTAATAATAGTAAGCTACTACAGCCATTA
AGGGAATTATTAAGGGGAGAAATGGGTAAAAAATGTGGACAGTCACCAGG
GTGATGGTGGCGCACGTTTTTTTTCCCACNACCTGGCCCCCAGAGGCAGG
CAGATTTCTGAGTTCGAGGTCAACCTGGTCTACAGAGAGAGATCCAGGAC
AGTCAGCGCTATACAGAGAAACACTGTCTTGAATAAACCAAAACCAAAAC
AACAACAACTACAACAAAAATCTGGACAGCCATGAGAGAGGAAAAGGAAC
TAGATTTTTGCGGTGTGTGTTGGAGGCGGGATCAGACCCAACAGACTTGC
ACATTCTAGGCAGGGCTGTTATCACTGAGTCAAGCCTCTACCCCTCATTG
GGTGATCCCAGGCTGGGCCTCCTACCCTGGATCATGCCTCCAGTTCTCTT
ATTGCCTAATATCCACTCTAGGGTCCCCTTCCACTGATCCTCCCCCCCCG
TTTCTTCACCGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_o24.b1 MSMg01no272_o24.b1 CHROMAT_FILE:
MSMg01no272_o24.b1 PHD_FILE: MSMg01no272_o24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:12 2005
         (296 letters)



>mm_chr7_28891535_28892230
          Length = 696

 Score =  561 bits (290), Expect = e-164
 Identities = 293/294 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattgccctaccattatggttctgggtttgtggataaagtctactcaagtcatgacctac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattgccctaccattatggttctgggtttgtggataaagtctactcaagtcatgacctac 260

                                                                       
Query: 61  ctcatcctggggtttagcacatctgattctagtcagaaagggacttagctcctccgagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcatcctggggtttagcacatctgattctagtcagaaagggacttagctcctccgagaa 320

                                                                       
Query: 121 gatacatcgctctctgaaggagctgagagtgcctgtctcaagctgaggcactggcatcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatacatcgctctctgaaggagctgagagtgcctgtctcaagctgaggcactggcatcct 380

                                                                       
Query: 181 catcctaactgacccttccacacaggtgactgtggatggtgaagtcgtggccctgcctgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 catcctaactgacccttccacacaggtgactgtggatggtgaagtcgtgaccctgcctgt 440

                                                                 
Query: 241 ggccacaggccacgtgagtgtgacagccgaaggcagaaacatagttctgcagac 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggccacaggccacgtgagtgtgacagccgaaggcagaaacatagttctgcagac 494


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no272_o24.g1 MSMg01no272_o24.g1 CHROMAT_FILE:
MSMg01no272_o24.g1 PHD_FILE: MSMg01no272_o24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:12 2005
         (292 letters)



>mm_chr7_29055860_29056551
          Length = 692

 Score =  545 bits (282), Expect = e-160
 Identities = 288/290 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaatttcgcacaatttagggaaaacaggaaaaacaaaaacccctaaccttagttgacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 aaaatttcgcacaatttagggaaaacaggaaaaacaaaaacccctaaccttagttgacac 431

                                                                       
Query: 61  aagcctggtggcctggtttgatctgctcaactcacatcgagaataaaaataaaatctttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 aagcctggtggcctggtttgatctgctcaactcacatcgagaataaaaataaaatctttc 371

                                                                       
Query: 121 agaaaagccacttaaataactagaaaaaaatatatttgtaactcatatcacaaactattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 agaaaagccacttaaataactagaaaaaaatatatttgtaactcatatcacaaactattg 311

                                                                       
Query: 181 ttatacctaatgtcgctaataatagtaagctactacagccattaagggaattattaaggg 240
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ttatacctaatgtcactaataatagtaagctactacagccattaagggaattattaaggg 251

                                                             
Query: 241 gagaaatgggtaaaaaatgtggacagtcaccagggtgatggtggcgcacg 290
           ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 250 gagaaatgggtaaaaaatgtggacattcaccagggtgatggtggcgcacg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |